Pvib013789.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- lrrfip2
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000203.1:634680-639502[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9e-93 4.8e-89 299.1 29.0 1 300 30 344 30 344 0.90 2 3 0.0081 2e+02 1.5 3.7 121 171 343 393 342 397 0.88 3 3 0.11 2.7e+03 -2.2 5.7 136 165 379 408 368 419 0.42
Sequence Information
- Coding Sequence
- ATGGACAGTTACGCCATCGGCGGTCGTAAAAGGGCACCAAGTAATCATACAATCGAAGATCAAGCTTTGGATCAAATTGCTAAACAGGCTGAATGTCGTTTGGCTGCTCGTAGACAAGCTCGCGCCGAAGCTAAAGAAATACGAATGCGTGAAATTGAAAGACAACAAAAAGAAGCCGAAGAAAACCTGGATCGGATGTACGATATTACTACGAATGCTGGATTTAATTcggTGGATTCGGCGAATCGTGGAATACGAAGTACGTCTTGCGTTAATAATAGGAATACCTCGGTTATATCATCACCAGTGAGCAATACGAGCAGAAGAAGCTCCGAGGACTCGTTGGAAGATGGGTTCAATTATCGCGATATCAAACTCGAACTGAAAGAACTCGAAGAGAAATTTCGTAAAGCCATGATTCAAAATGCTCAGTTGGATAATGAAAAGTCAGCTATATTATACCAAGTTGAATTATTCAAAGATAAATATCAAGATTTAGAAGCAGCATTCTCAGTATTACAAAAAGAACATAAAGACAAATGCAGAGAACACGAACAGCTGAAAAGATTATTCATCAAGCAAAAAGAAGATTTGGATTTCTTTAAATCACAATTAGAAGAAAGAGATAGGTTGATCGAGGAGCAAGGCTTAGTTGTGATAACGAACGGCGACGAAAATGGTATTCATAGTTCACTCGAAGATGAACAAAACGATAGCAATCATATTGAATATAAACGTAAATTGTCTAATCGAGTATTGATATCGTCACAATCTGCTGAGTTGTTACAGAATTTAGGAGAAGGTTCATTAGATAGTAGATTAAAGAAATACGCCCAAGAACGTAAAGAACTTCTCAGTGAGATCAGTAAACTTAAATTAGAATTAGATGCAGAACGAATAAAGTCTTCTGGAAACTGCTCTAGTATGATGAATGGCGCTGATAATGATGATTTCGATGAatcaagagaagCGTCAAAATTAGTCGGCGATTATAAATTCAAATGGCAGAAAGCTGAACAAGATATATCAACGTTACAAGCCAATGTTGCTCGATTAGAAAGTCAAGTTATTAGATATAAATCAGCTGCAGAAACTtcagaaaaagttgaagatgaattaaaagttgagaaaagaaaattacaaaGAGAGttacGCGAAACACAATCAAGAGTCGATGAATTGGAGACAGAAAACACACACCTGCAACGGCGAttagataaattgaaaaatgcaaaatcggcgttgttgaaagaaatttga
- Protein Sequence
- MDSYAIGGRKRAPSNHTIEDQALDQIAKQAECRLAARRQARAEAKEIRMREIERQQKEAEENLDRMYDITTNAGFNSVDSANRGIRSTSCVNNRNTSVISSPVSNTSRRSSEDSLEDGFNYRDIKLELKELEEKFRKAMIQNAQLDNEKSAILYQVELFKDKYQDLEAAFSVLQKEHKDKCREHEQLKRLFIKQKEDLDFFKSQLEERDRLIEEQGLVVITNGDENGIHSSLEDEQNDSNHIEYKRKLSNRVLISSQSAELLQNLGEGSLDSRLKKYAQERKELLSEISKLKLELDAERIKSSGNCSSMMNGADNDDFDESREASKLVGDYKFKWQKAEQDISTLQANVARLESQVIRYKSAAETSEKVEDELKVEKRKLQRELRETQSRVDELETENTHLQRRLDKLKNAKSALLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150345;
- 90% Identity
- iTF_01150345;
- 80% Identity
- -