Tman002607.1
Basic Information
- Insect
- Trabutina mannipara
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_900080175.1
- Location
- FKYK01032304.1:13853-17745[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-92 3e-88 296.0 26.4 1 300 30 339 30 339 0.90 2 2 0.098 1.8e+03 -2.0 7.7 123 172 340 389 338 414 0.67
Sequence Information
- Coding Sequence
- ATGGACAGTTACGCTATCGGCGGTCGTAAAAGGGCACCGAGTAATCATACAATCGAAGATCAAGCCTTAGATCAAATCGCAAAACAGGCTGAATGTCGTTTGGCTGCTCGTCGACAAGCTCGTGCTGAAGCTAAAGAGATACGAATGCGGGAAATCGAAAGGCAGCAAAGGGAAGCTGAAGAAAATgctgacaaaattttcgatataagTAATActgTGGATTCGGCGAATCGTGGATTACGAAATACGTCCTGCGTTAATAATAGGAATACCTCTGTTATATCATCACCCATAACTAACACAAGCAGAAGAAGTTCCGAAGACTCGTTAGAAGATGGATTCAATTATCGTGATATCAAACTAGAACTAAAGGAGCTCGAAGAGAAATTTCGTAAAGCCATGATTCAAAATGCTCAGCTAGACAATGAAAAATCGGCTATATTATATcaagttgaattattcaaagatAAATATCAAGATTTAGAAGCAGCATTTTCAGTATTACAAaaagaacaTAAAGACAAATGCAGAGAACACGAGCAGCTGAAAAGATTATTTATCAAGCAAAAAGAAGATTTAGATTTCTTCAAGTCACAATTAGAAGAAAGAGACAGATTAATTGAAGAGCAAGGTTTAGTTGTGATAACAAACGGTGATGAAAATGGTATTCATAGTTCGCTAGAAGACGAACACAACGAAAGCAATCATGTTGATTATAAGCGGAAATTGTCCAATCGGGTATTAATATCTTCGCAATCTGCCGAACTGCTGCAGAACTTAGGAGAAGGTTCTTTAGatgatagattaaaaaaatacgctcaAGAACGTAAGGAACTGCTAAGCGAAATTGGTAAACTGAAGTTAGAATTAGATGAAGAACGGATAAAATCCTCGGGTAATTGCTTTGGTATGATGAATGGCTCCAATAATGATGAATTTGACGAATCAAGAGATGTTTCAAGCTTACTCGgagattacaaatttaaatggCAAAAAGCTGAACAAGATATATCAACATTGCAAGCTAATgttgCTCGATTAGAGAGTCAGGTTATTAGATATAAATCGGCCGCAGAAACGtcagaaaaagttgaagacgaattgaaagtagaaaaaagaaaattgcaaagaGAAtTACGCGAAGCGCAATCAAGAGTCGAAGAATTGGAAACGACAAATATGCATTTACAACGACGGttagataaattgaaaaatgctaaaTCGGCGCTGTTgaaggaaatttga
- Protein Sequence
- MDSYAIGGRKRAPSNHTIEDQALDQIAKQAECRLAARRQARAEAKEIRMREIERQQREAEENADKIFDISNTVDSANRGLRNTSCVNNRNTSVISSPITNTSRRSSEDSLEDGFNYRDIKLELKELEEKFRKAMIQNAQLDNEKSAILYQVELFKDKYQDLEAAFSVLQKEHKDKCREHEQLKRLFIKQKEDLDFFKSQLEERDRLIEEQGLVVITNGDENGIHSSLEDEHNESNHVDYKRKLSNRVLISSQSAELLQNLGEGSLDDRLKKYAQERKELLSEIGKLKLELDEERIKSSGNCFGMMNGSNNDEFDESRDVSSLLGDYKFKWQKAEQDISTLQANVARLESQVIRYKSAAETSEKVEDELKVEKRKLQRELREAQSRVEELETTNMHLQRRLDKLKNAKSALLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150345;
- 90% Identity
- iTF_01150345;
- 80% Identity
- -