Omur037137.1
Basic Information
- Insect
- Ontholestes murinus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963969525.1
- Location
- OZ018390.1:537746-544811[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-108 3.5e-103 347.6 30.1 1 300 28 323 28 323 0.94 2 2 0.0051 5.5e+02 2.2 5.5 120 171 321 372 320 390 0.86
Sequence Information
- Coding Sequence
- ATGGACACCGGCGGCGGACGTAGACGCGTCGTCGCCAAGTCTTCGGCGGAAGATCAGGCGCTAGATCTCATCGCCAAGGAGGCGGAGGCTCGCCTCCTGGCGAAGAGGGCGGCGCGCGCCGAGGCCCGTGAAATCAGGATGCGCGACCTGGAGAGGCAGCAGCGTGAGCAAGAGGAAAACGCCGACAGGCAGTTCGACATGCTGGCGGAGCCGATGATAAGGAGGCCGCCCAGCACCTCCAGGTACCTCTCCAGCAGGCGGTCCTCGGAAGACTCCCTGGAAGACACGGGCAGCCTCAGGGATCTCAGACATGAGCTCAAGGAGGTGGAGGAGAAGTTCCGCAAGGCAATGATAGCGAACGCCCAGCTGGACAATGACAAGGCCGCGCAGACCTACCAACTGGAACTATTAAAAGACAGGTTGGAAGAATTAGAGGAGGACTTCTCGCAACTGAAACGCGAGCACAGGGAGAAGTGCAGGGATTTCGAGCAGCTGAAACGGCTGACCTGCAAGCTAAAAGAAGACCTGGCTGTGGTGAAGGCCGAGCTGGAAGAGAGGGACCGCCTGATAGCGGAGAAGGGCCTGGTGATCGTCGGTGAGGAGGAGCCCGTGTGCGAGGAGAACGGCGGAGAGTcttcgacgacgacgacgacggcCAACGGCCCGACGAGGATCCGGAGGGCGCTCGTCAGCGCCGAGAACGCCCACCTTTTGGAAAACGCCGGCGAGGGTAGTTtagacgTTCGATTAGCGAAGTTTGCTAAAGAGAGGGGCGAGCTGCAGGACCAAattagtcatttaaagttagaACTCGAGGAGGAGAGGAACCAGCGGAGGAAGCATCCCGGAGGCTCCACCCTGAACGGTCCCGACTCGGAATACGATGCCGCAGATATACAAAgagaAGCGAGCAAACAATTGGCCGAGTACAAGTTCAGGGCGCAGAAGGCCGAACAGGACGTGGCCACATTGCAGGCGATGGTGGCGCGTCTGGAGAGCCAGGTGATCAGGTACAAGTCGGCGGCGGAGATCTCCGAAAAGTCCGAGGAGGCGCTCAAGGCGGAGAAGAGGAAGCTGCAGAGGGAGGCACGGGAAGCACAGAATAGGGCCGAGGAATTGGAGATGTCGAACACGCACCTCATCAAGCGACTGGACAAGCTGAAGAACGCCAAGTCGGCCCTGCTTAAAGAACTTTGA
- Protein Sequence
- MDTGGGRRRVVAKSSAEDQALDLIAKEAEARLLAKRAARAEAREIRMRDLERQQREQEENADRQFDMLAEPMIRRPPSTSRYLSSRRSSEDSLEDTGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEDFSQLKREHREKCRDFEQLKRLTCKLKEDLAVVKAELEERDRLIAEKGLVIVGEEEPVCEENGGESSTTTTTANGPTRIRRALVSAENAHLLENAGEGSLDVRLAKFAKERGELQDQISHLKLELEEERNQRRKHPGGSTLNGPDSEYDAADIQREASKQLAEYKFRAQKAEQDVATLQAMVARLESQVIRYKSAAEISEKSEEALKAEKRKLQREAREAQNRAEELEMSNTHLIKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01186210; iTF_00083902; iTF_00049270; iTF_00904098; iTF_01058417; iTF_00920661; iTF_00369558; iTF_01371158;
- 90% Identity
- iTF_01186210;
- 80% Identity
- -