Sbim036242.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963971135.1
- Location
- OZ020185.1:17704952-17709813[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-107 4e-102 342.9 30.6 1 300 28 318 28 318 0.94 2 2 0.063 2.9e+03 -1.4 1.3 149 244 345 356 319 384 0.42
Sequence Information
- Coding Sequence
- ATGGATAGCGGCGGCGGTCGTAGGCGTGTTGTCCCGAAATCATCTGCAGAAGAACACGCTCTCGACCTCATCGCTAAAGagGCTGAAGCGCGGCTTTTGGCGAAAAGAGCGGCTCGTGCTGAGGCTCGGGAGATTAGGATGCGCGATTTGGAGAGGCAGCAACGTGAGCAGGAAGAAAACGCTGATCGGCAGTTCGACATGTTGGCCGAACCTATCATTCGACGTCCTGGTAGCACTTCGCGGTTCCTATCTAGTAGAAGATCATCGGAGGATTCCTTAGAAGATACGGGAAGCCTTAGAGATCTCAGGCATGAACTCAAAGAAGTCGAGGAGAAGTTTAGGAAGGCTATGATAGCTAATGCTCAGCTGGATAATGATAAAGCTGCTCAAACTTACCAATTAGACTTTCTTAAAGATAGACTGGAAGAATTAGAGCAGGAGCATTCACAACTTAAACGAGAACATAGGGATAAATGTAGGGATTTTGAACAATTGAAAAGGTTAACGACGAAGCTCAAAGAAGATTTAGGGATAGTTAAGGCTGAATTAGAAGATCGTGATAGATTAATAGCCGAGAAAGGTTTAGTCATAGTTGGGGAAGAGGAAAGTATCACTGAAGAAACATCCGATGGTTTAGTGAATGGAACCACGAGGATACGAAGGGCTTTAGTCAGTGCAGAAAATGCTCACCTCTTGGAAGCTGCCGGGGAAGGTAGTTTAGatgttcGGCTGGGAAGATTTGCTAAAGAAAGAGGAGAACTGGAGGATCAAATTAgtcatttaaaattagaattagaAGAAGAAAAGAACAAAAGAAGAAAGCACAGTGGATCAACGCTTAATGGGCCAAATTATGACTCTGATTATGATGCGGCAGATATGCAACGAGAAGCCAGCAAACAGTTAGCCGAGTTTAAATTTCGAGCTCAAAAGGCAGAACAAGACGTAGCCACATTGCAGGCGACTGTGGCAAGGTTAGAAAGTCAAGTTATTAGGTATAAAACAGCTGCTGAAGTTTCTGAAAAGTCGGAAGAAGCATTGAAAGCTGAAAAACGAAAAATTCAAAGAGAGGATTTAAGTAGTAGTAAAAGTAGTTCTTTAGATGATACCAATAAAGAACTTGAAAGTATTAGCTCAGATGAAGGTAGCATTTGTGTACTGTGA
- Protein Sequence
- MDSGGGRRRVVPKSSAEEHALDLIAKEAEARLLAKRAARAEAREIRMRDLERQQREQEENADRQFDMLAEPIIRRPGSTSRFLSSRRSSEDSLEDTGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLDFLKDRLEELEQEHSQLKREHRDKCRDFEQLKRLTTKLKEDLGIVKAELEDRDRLIAEKGLVIVGEEESITEETSDGLVNGTTRIRRALVSAENAHLLEAAGEGSLDVRLGRFAKERGELEDQISHLKLELEEEKNKRRKHSGSTLNGPNYDSDYDAADMQREASKQLAEFKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEKSEEALKAEKRKIQREDLSSSKSSSLDDTNKELESISSDEGSICVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096637;
- 90% Identity
- -
- 80% Identity
- -