Ninv014445.1
Basic Information
- Insect
- Nicrophorus investigator
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963457615.1
- Location
- OY735144.1:7489543-7494229[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-106 2.1e-101 339.4 30.6 1 300 28 333 28 333 0.90 2 2 0.0076 1.6e+02 1.6 3.9 120 170 331 381 330 392 0.88
Sequence Information
- Coding Sequence
- ATGGACAGCGGAGGCGGCCGCAGAAGGGTGGCAGCGAAGTCGTCCGCCGAAGACCAGGCGCTGGATCTGATCGCTAAGGAGGCAGAGGCGCGGCTCCTGGCACGAAGGGCTGCGAGGGCTGAGGCACGAGAGATTCGGATGAGAGACCTGGAGAGGCAACAGCGTGAACAGGAGGAAAATGCGGATAAGCAATTCGATATGCTCGCGGAGCCGATAATCCGAAGGACAAACAGCAACACCTCCCGATACTTGTCCAGTCGAAGATCATCGGAGGACTCGCTGGAGGACACCGGTAGCTTACGAGATCTTAGGCATGAACTCAAGGAGGTCGAGGAGAAGTTCCGCAAGGCGATGATTGCCAATGCTCAGCTGGACAACGACAAGGCGGCCCAGACATATCAATTGGAACTCCTCAAAGACAGGTTGGAGGAGCTGGAGGAGGAATGCTCGCAGCTGAAGCGGGAGCATAGGGACAAGTGTAGGGATTTCGAGCAATTAAAACGGCTGACGACGCGGCTGAAGGAGGATCTGGGCGTGGCGCGGGCGGAATTAGAAGAACGCGATCGACTGATCTCCGAGAAGGGTCTGGTGATTATCGCCGAGGAAGAGTCGGTCAACGGCGGCGAGGAGACCACGGATGGTATTTCCAATGGCCAGACGAGGCTAAGGAAGGCGCTAGTCAGTGCGGAGAACGCCCACCTATTGGAGCACGCAGGCGAAGGCAGCCTAGaTGTACGGTTGGGAAAGTTCGCGAAAGAAAGGTGCGAGCTTCAGGATCAGATTAGTCATTTAAAGCTGGAGCTGGAGGAGGAGAAGACCAAGAGGCGGAAGCACAGCAGTGTTGGTGGCAGTGGCAGCATTAGCAGTGGATCAGGAACGACGCCGAACGGACCTAATTACGATTCCGATTTAGACGCAGCCGATATTCAAAGGGAGGCCTCCAAACAGTTGGCTGAATTCAAATTCAGAGCGCAGAAGGCGGAGCAGGACGTAGCCACCTTGCAGGCGACGGTGGCACGTCTGGAAAGCCAGGTTATTCGCTACAAATCTTCGGCGGAGGTATCAGAAAAATCCGAAGAGGCTCTCAAACTGGAAAAGAGAAAGTTACAACGCGAGGCGAGGGAAGCGCAGAACAGGGCCGAGGAACTGGAGCTGTCCAACACGCATCTGCTCAAGCGGTTAGATAAGTTAAAGAACGCAAAGTCGACGCTTCTTAAGGAACTTTGA
- Protein Sequence
- MDSGGGRRRVAAKSSAEDQALDLIAKEAEARLLARRAARAEAREIRMRDLERQQREQEENADKQFDMLAEPIIRRTNSNTSRYLSSRRSSEDSLEDTGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEECSQLKREHRDKCRDFEQLKRLTTRLKEDLGVARAELEERDRLISEKGLVIIAEEESVNGGEETTDGISNGQTRLRKALVSAENAHLLEHAGEGSLDVRLGKFAKERCELQDQISHLKLELEEEKTKRRKHSSVGGSGSISSGSGTTPNGPNYDSDLDAADIQREASKQLAEFKFRAQKAEQDVATLQATVARLESQVIRYKSSAEVSEKSEEALKLEKRKLQREAREAQNRAEELELSNTHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096637;
- 90% Identity
- -
- 80% Identity
- -