Nrib010628.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- lrrfip2
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010000302.1:128705-134765[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-87 1.5e-82 278.1 28.5 1 300 215 522 215 522 0.92 2 2 0.017 5.5e+02 0.5 0.6 121 164 521 564 520 578 0.85
Sequence Information
- Coding Sequence
- ATGAATGATAGTCATGTTAAAATGAACGTAACATCGTGTGATCTGGTTACTGGAGCACATATTACGCATATATATATAAATCAAACTCCAGATAATTTAAATGAAAAATCATTAGATACTAAATTACTCGTCAATGGGCCTGTGGAATTTAATAAATCCAATTCTACGTTTGCGTTTAAAGAGTCGTCGTCACTGTACTCTAACAGTATTAATGATAGTAGGGCTGCAGTGGTTAATATCTTAGACAAGACTACTCCATACGAATATTCTAACGTCGTTCAATCGTCTCAGTTGATACTAGACAATAATAGATCATATTCTTGTCACATATGTGTTAATGATAATGCCGCTCTGAATTCAGAATGCGAGACTATTAATACTGATGCGATTCGTCCAATATGCAATAATGATACAAATTATACTTATCCTTCATCAGAGGATGACGAAAGTTATTGTGGATATTCTATTGCTGATATCAGTGATATCGATGAGCTATCAGATAATATTTTAAATGATCGTCAATCTAGTCCACTTAGGGAACAAACGAAGGTACAAACTAATGGTTCTAGTCATGGCTATAATTCCTGTGGTGATTCTGAAACTGATGGAATTGTAAAGTTTCTGGACAAGCGTAATAATGAAGCGGAAGCTCGTTTGGCTGCAAGACGTCAAGCCCGTGCTGAAGCTAGAGAAATTCGTATGCGAGAAATCGAACGGCAACAAAAAGAAGCCGAAGAAAATGCAGACAAAGCATTTGACATGCACGCAGCAGGCAAATATAAAATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTAGATGGGCCAATAACAAATCGAGTATCACGAGTAGCTGCTAGTACTGCCAGTCCTAGAGCAGCTAGTTCGATACATAATACTAACAGTTACCAATCTAGTCGACGCAATTCAGTTGATTCTCTTGATGAATCTACTCCTAACTTTCGTGATTTTAGGATGGAATTAAAAGACTTAGAAGAAAAGTTTCGAAAAGCTATGGTACAAAATGCTCAACTTGACAATGAAAAAGCAGCTGTAACATATATGGTGGAATTGTATAAAGACAAGTACACCGATATTGAAGAAGAGCTTTTGCATATAAAACGAGAACATAAAGAGAGTTGTAGGGAAAATGAAAAATTAAAACGTTTATTGGCTACTCAAAAACTAGAATCTATAACACTTCAACAAGAACTAGAAGAACTAATTATCAGCACGGAACAAGAATGTTGGAGTGAAAGTGATCAATGTAATAGTAAAATAAAACGTGCCTTAGTTTCTGTTGAAAATGCTCAATTGTTACAAGACGCAGGAGAAGGTTGTTTAGATGTACGACTCAAAAAGTTTACTGAAGAACGCAACAGCTATATAGATGAAATTAACCAGCTCAAATTAGAGTTGCAAGAGGCCAAACGTCATAGTGATAATCATTACAATGGTACAGACTCAGACGATTTGGAAGATGCCCAAAAAGAAACTAATAAAATTCTTGGCGATTATAAATTCAAGTGGCAAAAGGCTGAACAAGATATTTCTACATTACAAGCTAATGTTGCTAGGCTGGAGAGTCAAGTTATTAGATATAAAACAGCTTCTGAAGCATCTGAAAAAGCTGAAGATGAACTGAAATTGGAAAAACGAAAACTACAGCCTCAAGTAAAAGTTGAAGAGTTGGAGACATCCAATATGCATTTGTTAAAACGCTTTGACAAATTAAAGAACGCCAAATCTAGTTTACTGAAAGATTTATAA
- Protein Sequence
- MNDSHVKMNVTSCDLVTGAHITHIYINQTPDNLNEKSLDTKLLVNGPVEFNKSNSTFAFKESSSLYSNSINDSRAAVVNILDKTTPYEYSNVVQSSQLILDNNRSYSCHICVNDNAALNSECETINTDAIRPICNNDTNYTYPSSEDDESYCGYSIADISDIDELSDNILNDRQSSPLREQTKVQTNGSSHGYNSCGDSETDGIVKFLDKRNNEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHAAGKYKIXXXXXXXXXXXXLLDGPITNRVSRVAASTASPRAASSIHNTNSYQSSRRNSVDSLDESTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELLHIKREHKESCRENEKLKRLLATQKLESITLQQELEELIISTEQECWSESDQCNSKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNSYIDEINQLKLELQEAKRHSDNHYNGTDSDDLEDAQKETNKILGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKRKLQPQVKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01031970; iTF_00940494; iTF_00019027; iTF_00135321; iTF_01305550; iTF_00973044; iTF_01304856; iTF_01328632; iTF_01032890; iTF_00184576;
- 90% Identity
- -
- 80% Identity
- -