Mper008669.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Myzus persicae
Gene Symbol
lrrfip2
Assembly
GCA_001856785.1
Location
NW:133713-151913[-]

Transcription Factor Domain

TF Family
LRRFIP
Domain
LRRFIP domain
PFAM
PF09738
TF Group
Unclassified Structure
Description
LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.3e-98 3.3e-94 315.3 33.7 1 300 216 514 216 514 0.92
2 2 0.0086 1.3e+02 1.4 5.3 121 172 513 564 512 573 0.92

Sequence Information

Coding Sequence
ATGCAGAATGATAGTCATATTAAAATGAACGTAACATCGTGTGATCTGATTACTGGAGCACATATTACtcatatatacataaatcaaactcaagataatttaaatgaaaaatcattaGATACTAAATTACTCGTAAATGAGCCTATCGAATTGAATACATCTAATTCTACTTTTGCGCCGAAAGAGTCCTCATCACTGTACTCTAGCAGTATTAATGACTGTAGGGATGCGGCGGTGAATATCTTAAACAACGAGACTCCATATGAATATTCTAAAGTCGTTCAATCATCCCAGTTGATACTAGATAATAATGGATCATATTCTTGTCACATATGTGTTAATGATAAAACCGCTCTCAATTCAATGCGCAAGACTATTAATACTGATTCTATTCGTCCAGTATACAATTCTGATACTAATTATATCTATCCTTCGTCAGAGGATGACGAAAGTTATTGTGGATATTCTATTGCTGATATCAGTGATATCGATGAGTTATCTGATAGTATTTTAAATGATCGTCAGTCTAGTCCACTTTGGGAACACACGAAGGTACAGACTAATGGTTCTAGTCATGGCTATAATTACTGTGGTGATTCTGAAGCTGGTGGAATTGTAACGTTTCTGGACAAGCGTAATAATGAAgcGGAAGCTCGTTTGGCTGCAAGACGTCAAGCCCGTGCAGAAGCTCGAGAAATTCGTATGCGAGAAATTGAACGCCAACAAAAAGAAGCCGAAGAAAATGCAGACAAAGCTTTTGACATGCATGCTGCAgATGGGACTATAGCAAATCGAGTATCACGAGTAGCTGCTAGCACTGCCAGTCCTAGAGCAGCTAGTTCAATACATAATACCAACAGTTACCAATCTAGTCGACGTAATTCAGTTGATTCTCTTGATGAATCTACTCCTAACTTTCGAGATTTTAGGATGGAATTAAAAGACTTAGAAGAAAAGTTTCGAAAAGCTATGGTACAAAATGCTCAACTCGACAATGAAAAAGCAGCTGTGACATATATGGTAGAATTGTATAAAGACAAGTACACTGATATTGAAGAAGAGCTTATGcatataaaaCGAGAACATAAAGAAAGTTGTAgggaaaatgaaaaattaaaacgtttattGGCTACTCAAAAACTAGAATCTATAACACTTCAACAAGAACTAGAAGAACGTGATAAACTCATTgaggaaaaaGGACTAGTAATAATCAGCACAGAACAAGAATTTTCAAGTGAGAGTGACCaatgtaatagtaaaataaaacgtGCCTTAGTTTCTGTTGAAAATGCTCAATTGTTACAAGATGCAGGAGAAGGTTgcttagaTGTACGACTCAAAAAGTTTACTGAAGAACGCAACAGCTATATAGATGAAATTAACCAGCTCAAATTAGAGTTGCAAGAGGCCAAACGTCATAGTGATAACCATTACAATGGTACAGATTCAGACGATTTGGAAGATGCCCAAAaagaaACTAATAAAGTTCTTGGTGATTATAAATTCAAGTGGCAAAAGGCTGAACAAGATATTTCTACATTACAAGCAAATGTTGCTAGGCTTGAGAGTCAAGTTATTAGATATAAGACAGCTTCGGAAGCATCTGAAAAAGCTGAAGATGAACTGAAATTGGAAAAACGAAAACTACAGCGTGAGctTCGAGAAGCTCAAGCAAAAGTTGAAGAGTTGGAGACATCCAATATGCATTTGTTGAAACGCTTTGACAAATTAAAGAACGCCAAATCTAGTTTACTAAAAGATTTATAA
Protein Sequence
MQNDSHIKMNVTSCDLITGAHITHIYINQTQDNLNEKSLDTKLLVNEPIELNTSNSTFAPKESSSLYSSSINDCRDAAVNILNNETPYEYSKVVQSSQLILDNNGSYSCHICVNDKTALNSMRKTINTDSIRPVYNSDTNYIYPSSEDDESYCGYSIADISDIDELSDSILNDRQSSPLWEHTKVQTNGSSHGYNYCGDSEAGGIVTFLDKRNNEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHAADGTIANRVSRVAASTASPRAASSIHNTNSYQSSRRNSVDSLDESTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLATQKLESITLQQELEERDKLIEEKGLVIISTEQEFSSESDQCNSKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNSYIDEINQLKLELQEAKRHSDNHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKRKLQRELREAQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01037790;
90% Identity
iTF_01031970;
80% Identity
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