Sgrm019619.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003264975.1
- Location
- QEWZ01001642.1:458869-488370[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-98 3.1e-94 316.2 31.4 1 300 215 513 215 513 0.93 2 2 0.02 2.6e+02 1.2 5.4 121 172 512 563 511 568 0.93
Sequence Information
- Coding Sequence
- ATGAATGATAGTCATATCAAAATGAACGTAACATCGTGTGATTTGGTTACTGGAGCCCATATTACGcacatatacataaatcaaaatccagataatttaaatgaaaaatcattAGATGCAAAATTACTCGTCAGTGTACCTGTTGAAATTAATACATCTAATTCTACGTCAAAAGAGTCCTCATCATTGTACTCCAGCAGTGTTAATAACGCGGACGGTAGGGATGCGGTAGTGAATATCTTAAATAACGTGACTCCATATGAATATTCTAAAGTCGTTCATTCGTCCCAGTTGATACTAGATAATAATGAATCATATTCTTGTCACATATGTATTAATGATAATACCAATCTGAATTCAGTATGCGAAAATTTTAATACTGATGCGATTCGTCCAGTATGCGACGCTGAAAcaaattatacgtatttttcATCAGAGGACGACGAAAGTTACTGTGCATATTCTATTGCTGATATCAGTGATATCGATGAGCTatcagataataatttaaacgatcGTCAATCTAGTTCTCTTAGGGAACAAACAAGGGTACAAATTAATGGTTCTAGTCCTGGCTATAATTCTAGCTGTGATTTTGAAGCTGATGGAATTGTAACATTTCTGGACAAGTGTAATAATAAAgcAGAAGCTCGCTTGGCTGCAAGACGTCAAGCCCGTGCTGAAGCTAGAGAAATTCGTATGCGAGAAATTGAACGGCAACAAAAAGAAGCTGAGGAAAATGCAGACAAAGCTTTTGATATGCATGCAGCAGATGGACCTATTATAAATCGAGTTTCACGAGTAGCTGCAAGTACTGCCAGCCCTAGAGCAGCCAGTTCAATACATAATACTAACAGTTACCAATCTAGTCGACGTAATTCAGTTGATTCTCTTGATGAATCTACTCCTAATTTTCGAGATTTTAGGaTGGAATTAAAAGACTTAGAAGAAAAGTTTCGTAAAGCTATGGTACAAAATGCTCAACTCGACAATGAAAAAGCAGCTGTGTCATATATGGTAGAATTGTATAAAGACAAGTATACCGATATTGAAGAAGAACTTATgcatataaaacGAGAACATAAAGAAAGTTGTAGagaaaacgaaaaattaaaacgtttattGGCTACTCAAAAACTAGAATCTATATCACTTCAACAAGAACTAGAAGAACGTGATAAACTCATTGaggaaaaagGTCTAGTAATTATCAGCACAGAACAAGAACATTGGAGTGAGAGTGATCaatgtaatagtaaaataaaacgtGCCTTAGTCTCTGTTGAAAATGCTCAATTGTTACAAGATGCAGGAGAAGGTTGTttagATGTACGACTCAAAAAATTTACCGAAGAACGTAACAGCTATATAGACGAAATTAACAGGCTCAAATTAGAGTTACAAGAAGCCAAACGTCATAGTGATAACCATTATAATGGTACAGACTCAGACGATTTGGAAGATGCCCAAAaagaAACTAATAAAGTTCTTGGtgattataaattcaaatggcAAAAGGCTGAACAAGATATTTCTACATTACAAGCTAATgtagCTAGACTTGAGAGTCaagttattaggtataaaacaGCTTCTGAAGCTTCTGAAAAAGCTGAAGATGAACTGAAATTGGAAAAACGAAAACTACAGCGcgagcttCGAGAAGCTCAAGCAAAGGTTGAAGAATTGGAGACATCcaatatgcatttattaaaacGTTTTGACAAGTTAAAGAACGCCAAATCCAGTTTACTAAAAGATTTATAA
- Protein Sequence
- MNDSHIKMNVTSCDLVTGAHITHIYINQNPDNLNEKSLDAKLLVSVPVEINTSNSTSKESSSLYSSSVNNADGRDAVVNILNNVTPYEYSKVVHSSQLILDNNESYSCHICINDNTNLNSVCENFNTDAIRPVCDAETNYTYFSSEDDESYCAYSIADISDIDELSDNNLNDRQSSSLREQTRVQINGSSPGYNSSCDFEADGIVTFLDKCNNKAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHAADGPIINRVSRVAASTASPRAASSIHNTNSYQSSRRNSVDSLDESTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVSYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLATQKLESISLQQELEERDKLIEEKGLVIISTEQEHWSESDQCNSKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNSYIDEINRLKLELQEAKRHSDNHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKRKLQRELREAQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037790;
- 90% Identity
- iTF_01305550; iTF_01304856; iTF_00135321; iTF_00973044;
- 80% Identity
- -