Asol002311.1
Basic Information
- Insect
- Aulacorthum solani
- Gene Symbol
- lrrfip2
- Assembly
- GCA_008528875.1
- Location
- PVMI01040639.1:936-7073[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-99 2.2e-94 317.2 30.0 1 300 211 509 211 509 0.92 2 2 0.009 3.3e+02 1.4 5.3 121 172 508 559 507 568 0.92
Sequence Information
- Coding Sequence
- ATGCAGAATGATagtcatattaaaatgaacGTAACATCGTGTGATCTGGTTACTGGAGCACATATTacgcatatatacataaatcaaaCTCCAGacgaaaaatcattaaattctaaattactCGTCAATGTACCTGTTGAATTTAATACATCTAATTCCACGTTTGCGTCGAAAGAGTCCTCATCACTGTACTCTAGCAATATTAATGACGGCAGGGATGCTGTGGTGAATATCTTAAACAACAAGACTCCATATGAATATTCCAAAGTCGTTCAATCGTCTCAGTTGATACTTGATAATAATGGATCATATTCTTGTCACATATGTGTTAATGATAATGCCTCTCTGAATTCAGTATGCGAGACTATTAATACTGATTCGATTCGTCCAGTATGCAATGctgatactaataattatacctatccTTCATCAGAGGATGACGAAAGATATTCTATTGCTGATATCAGTGATATCGATGAGAtatcagataatattttaaatgatcatCAATCTAGTCCACTTAGGGAACAAACGAAGGTACAAACTAATGGTTCTAGTCATGGCTATAATTCTAATGGTGATTCTGAAGCTGATGGAATTGTAACGTTTCTGGACAAGCGTAATAATGAAGCGGAAGCTCGTTTGGCTGCAAGACGTCAAGCCCGTGCCGAAGCTAGAGAAATTCGTATGCGGGAAATTGAACGACAACAAAAAGAAGCCGAAGAAAATGCAGACAAAGCTTTTGACATGCATGCAGCAgATGGGCCTATAGCAAATAGAGTATCACGAGTAGCTGCTAGCACTACCAGTCCTAGAGCAGCCAGttcaatacataatactaacAGTTACCAATCTAGTCGACGTAATTCAGTTGATTCTCTTGATGAATCTACTCCTAACTTTCGAGATTTTAGGATGGAATTAAAAGACTTAGAAGAAAAGTTTCGAAAAGCCATGGTACAAAATGCTCAACTTGACAATGAAAAAGCAGCTGTGACATATATGGTAGAATTGTATAAAGACAAGTACACCGATATTGAAGAAGAGCTTATgcatataaaacGAGAACATAAGGAGAGTTGTAGggaaaacgaaaaattaaaacggtTATTGGCTACTCAAAAACTAGAATCTATAACACTTCAACAAGAACTAGAAGAACGTGATAAACTCATTGAGgaaAAAGGACTAGTGATTATCAGCACAGAACAAGAATGTTGGAGTGAAGGTGACCaatgtaatagtaaaataaaacgtgCCTTAGTTTCTGTTGAAAATGCTCAATTGTTACAAGACGCAGGAGAAGGTTGCTtagATGTACGACTCAAAAAGTTTACTGAAGAACGTAACAGCTATATAGATGAAATTAACCAGCTCAAATTAGAGTTGCAAGAGGCCAAACGTCATAGTGATAACCATTACAATGGTACAGACTCAGACGATTTGGAAGATGCCCAAAaagaaACTAACAAAGTTCTTGGTGATTATAAATTCAAGTGGCAAAAGGCTGAACAAGATATTTCTACATTACAagcaaatgTTGCTAGGCTTGAGAGTCAAGTTATTAGATATAAAACAGCTTCTGAAGCATCAGAAAAAGCTGAGGATGAACTGAAATTGGAAAAACGAAAACTACAGCGtgagcttCGAGAAGCTCAAGCAAAAGTTGAAGAGTTGGAGACATCCAATATGCATTTGTTGAAACGCTTTGACAAATTAAAGAACGCCAAATCTAGTTTACTAAAAGATTTATAA
- Protein Sequence
- MQNDSHIKMNVTSCDLVTGAHITHIYINQTPDEKSLNSKLLVNVPVEFNTSNSTFASKESSSLYSSNINDGRDAVVNILNNKTPYEYSKVVQSSQLILDNNGSYSCHICVNDNASLNSVCETINTDSIRPVCNADTNNYTYPSSEDDERYSIADISDIDEISDNILNDHQSSPLREQTKVQTNGSSHGYNSNGDSEADGIVTFLDKRNNEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHAADGPIANRVSRVAASTTSPRAASSIHNTNSYQSSRRNSVDSLDESTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLATQKLESITLQQELEERDKLIEEKGLVIISTEQECWSEGDQCNSKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNSYIDEINQLKLELQEAKRHSDNHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKRKLQRELREAQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037790;
- 90% Identity
- iTF_01031970;
- 80% Identity
- -