Apis002535.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_005508785.1
- Location
- NC:60873871-60899617[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-99 1.2e-94 316.9 32.2 1 300 215 513 215 513 0.92 2 2 0.01 1.7e+02 1.2 5.4 121 172 512 563 511 568 0.93
Sequence Information
- Coding Sequence
- ATGAATGATAGTCATATTAAAATGAACGTAACATCATGTGATTTGGTTACTGGAGCACATATTACCCATGTATACATAAATCAAACTCcagataatttaaatgaaaaatcattAGACACAAAATTACTCGTCAATGGACctgttgaatttaataaatctaattCTACGTTTGCGTCGAAAGAGTCCTCGTCACTGTACTCTAGCAATATTAATGACGGTAGGGATGCGGTGGTGAATATCTTAAAAAACGCGACACCATATGAATATTCTAAAGTTGTTCAATCTTCTCAGTTGAGACTAGACAATAATGGATCATATTCTTGTCATATATGTGTTAATGATAATGCCGCTCTGAATTCAGTGTGCGAGACTATTAATACTGATGTGATTCGTCCAATATGCAATGCTGGTACAAACTATACTTATCCTTCATCAGAGGATGACGAAAGTTATTGTGGATATTCTATTGCTGATATCAGTGATATTGATGACCtatcagataatattttaaatgatggtCAATCTAGTCCACTTAGGGAACAAACGAGGTTACAAACTAATGGTTCTAGTCATGGCTTTAATTCCAGTGGTGATTCTGAAGCTGATGGAATTGTAACGTTTCTGGACAAGCGTAATAATGaagCGGAAGCTCGTTTGGCTGCAAGACGTCAAGCCCGTGCTGAAGCTAGAGAAATTCGTATGCGAGAAATTGAACGGCAACAAAAAGAAGCCGAAGAAAATGCAGACAAAGCATTTGACATGCATGCAGCAGATGGGCCTTTAGCAAATCGAGTATCACGAGTAGCTGCTAGTACTGCTAGTCCTAGAGCAGCCAgttctatacataatactaaCAGTTACCAATCTAGTCGACGCAATTCAGTTGATTCTCTTGATGAATCTACTcctaattttcgagattttagGatGGAATTAAAAGACTTAGAAGAAAAGTTTCGAAAAGCTATGGTACAAAATGCTCAACTTGACAATGAAAAAGCAGCTGTGACATATATGGTAGAATTGTATAAAGACAAGTACACCGATATTGAAGAAGAGCTTATGCATATTAAaCGAGAACATAAAGAGAGTTGTagggaaaatgaaaaattaaaacgtttattGGCTACTCAAAAACTAGAATCTATAACACTTCAACAAGAACTAGAAGAACGTGATAAACTCATTgaggaAAAAGGACTAGTAATTATCAGCACAGAACAAGAAAGTTGGAGTGAAAGTGaccaatgtaataataaaataaaacgtgccTTAGTTTCTGTTGAAAATGCTCAATTGTTACAAGATGCAGGAGAAGGTtgtttagATGTACGACTCAAAAAGTTTACTGAAGAACGCAACAGCTATATAGATGAAATTAACCAGCTCAAATTAGAGTTGCAAGAGGCCAAACGTCATAGTGATAATCATTACAATGGTACAGACTCAGACGATTTGGAAGATGCCCAAAaagaaACTAATAAAGTTCTTGGTGATTATAAATTCAAGTGGCAAAAGGCTGAACAAGATATTTCTACATTACAagcaaatgtTGCTAGGCTAGAGAGTCAAGTTATTAGATATAAAACAGCTTCTGAAGCATCTGAAAAAGCTGAAGATGAACTGAAATTGGAAAAACGAAAATTACAGCGTGAGctTCGAGAAGCTCAAGCAAAAGTTGAAGAGTTGGAGACATCCAATATGCATTTGTTAAAACGCTTTGACAAATTAAAGAATGCCAAATCTAGTTTACTGAAAGATTTATAA
- Protein Sequence
- MNDSHIKMNVTSCDLVTGAHITHVYINQTPDNLNEKSLDTKLLVNGPVEFNKSNSTFASKESSSLYSSNINDGRDAVVNILKNATPYEYSKVVQSSQLRLDNNGSYSCHICVNDNAALNSVCETINTDVIRPICNAGTNYTYPSSEDDESYCGYSIADISDIDDLSDNILNDGQSSPLREQTRLQTNGSSHGFNSSGDSEADGIVTFLDKRNNEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHAADGPLANRVSRVAASTASPRAASSIHNTNSYQSSRRNSVDSLDESTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLATQKLESITLQQELEERDKLIEEKGLVIISTEQESWSESDQCNNKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNSYIDEINQLKLELQEAKRHSDNHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKRKLQRELREAQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037790;
- 90% Identity
- iTF_01031970;
- 80% Identity
- -