Msac000411.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- lrrfip2
- Assembly
- GCA_002803265.2
- Location
- NW:1350347-1373751[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.32 3.7e+03 -3.7 0.3 54 76 51 76 39 81 0.57 2 3 2.9e-99 3.4e-95 318.2 33.9 1 300 218 516 218 516 0.92 3 3 0.0099 1.2e+02 1.2 5.5 121 172 515 566 514 575 0.92
Sequence Information
- Coding Sequence
- ATGAATGAAagtcatattaaaatgaacGTTACGCCATGTGATCTGGTTACTGGAGCGCATATTACtcacatatacataaatcaaactacagataatttaaatgaaaaatcattaGATGCTAAATTACTCGTCAATGTGCCTGttgaatttaatacatctaACTCTACATTAGCGTCGAAAAAGTCCACATCGCTATATTCTAGCAGTGTTAATAGTGCGGATAGTAGGGATGCGGTGGTGAATATCTTAAATAACGTTACTCCATATGAATATTCTAAAGTCGTTAACTCGTCGTCTAAGTTGATATTTGATAATGACGGATCATATTCTTGTCACACATGTGTTAATGATAATACTGCACTGAATTCAGTAtgcgaaaatttaaatactgatGCAATTCGTCCAGTATGCAACGCtgaaacaaattatacttatttttcatcAGAGGACGACGAAAGTTATTGTGCATATTCTATTGCTGATATCAGTGATATCGATGAGCtatcagataatattttgaacgaTCGTCAATCTAGTCCTCTTAGGGAACAAACAAAGGTACGAATTAATGGTTCTAGTCATGACTATAATTCCAATTGTGATTCTGAAGCAGATGGAATTGTAGCGTTTTTGGATAAGCGTAATGATGaaGCTGAAGCTCGTTTGGCTGCAAGACGTCAAGCCCGTGCTGAAGCTAGAGAAATTCGTATGCGAGAAATTGAACGACAACAAAAAGAAGCTGAGGAAAATGCAGACAAAGCTTTTGATATGCATACTGCTGATGGATCTATTATAAATCGAGTATCACGAGTAGCTGCAAGTACTGCCAGCCCTAGAGCAGCCAGTTCAATACACAATACTAACAGTTACCAATCTAGTCGACGTAATTCGGTTGATTCTCTTGATGAATCTACTCCTAATTTTCGAGATTTTAGGatgGAATTAAAAGACTTAGAGGAAAAGTTCCGTAAAGCTATGGTACAAAATGCTCAACTTGACAATGAAAAAGCAGCTGTGACATATATGGTAGAATTGTACAAAGACAAGTACACTGATATCGAAGAAGAACTTATgcatataaaaCGAGAACATAAAGAGAGTTGTagagaaaatgaaaaattaaagcgTTTATTGGCCGCTCAAAAACTAGAATCTGTAACACTTCAACAAGAACTAGAAGAACGTGATAAACTCATTgaggaaaaAGGTTTAGTAATTATCAGCACAGAACAAGAAAGTTGGAATGAGAATGATCaatgtaatagtaaaataaaacgtgCCTTAGTCTCTGTTGAAAATGCTCAATTGTTACAAGATGCAGGAGAAGGTTgtttagATGTACGACTCAAAAAGTTTACTGAGGAGCGCAACAACTATATAGACGAAATTAATAGGCTCAAATTAGAGTTGCAAGAGGCCAAACGTCATAGTGATAACCATTATAATGGTACAGACTCAGACGATTTGGAAGATGCCCAAAaagaaACTAATAAAGTTCTTAGTGATTATAAATTCAAGTGGCAAAAGGCTGAACAAGATATTTCTACGTTACAAgctaatgtagCTAGACTTGAAAGTCAAgtaattagatataaaacaGCTTCTGAAGCATCTGAGAAAGCTGAAGATGAACTGAAATTGGAAAAACGAAAACTACAGCGCgagctccGAGAAGCTCAAGCAAAAGTTGAAGAATTGGAGACATccaatatgcatttattaaaacgCTTTGACAAGTTAAAGAATGCCAAATCCAGTTTActaaaagatttataa
- Protein Sequence
- MNESHIKMNVTPCDLVTGAHITHIYINQTTDNLNEKSLDAKLLVNVPVEFNTSNSTLASKKSTSLYSSSVNSADSRDAVVNILNNVTPYEYSKVVNSSSKLIFDNDGSYSCHTCVNDNTALNSVCENLNTDAIRPVCNAETNYTYFSSEDDESYCAYSIADISDIDELSDNILNDRQSSPLREQTKVRINGSSHDYNSNCDSEADGIVAFLDKRNDEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHTADGSIINRVSRVAASTASPRAASSIHNTNSYQSSRRNSVDSLDESTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLAAQKLESVTLQQELEERDKLIEEKGLVIISTEQESWNENDQCNSKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNNYIDEINRLKLELQEAKRHSDNHYNGTDSDDLEDAQKETNKVLSDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKRKLQRELREAQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037790;
- 90% Identity
- iTF_01328632;
- 80% Identity
- -