Rnym006533.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000007.1:10378285-10384322[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-98 3.2e-94 316.1 32.5 1 300 210 508 210 508 0.93 2 2 0.0099 2.5e+02 1.2 5.4 121 172 507 558 506 563 0.93
Sequence Information
- Coding Sequence
- ATGAACGTATCATCATGTGATCTGGTCACTGGAGCGCACATTAcgcaaatatacataaatcaaacttcagataatttaaatgaaaaatcattAGATGCTAAATTACtcgtaaatatacctattgaatttaatacatctAATTCTACGTTTTCGTCGAAAGAGTCCTCATCTCTATACTCCGGCAGTATTAAAAACGCGGACGATAGGGATGCAGTGGTGAATATCTTAAATAACGTGACTCCATATcaatattctaaaatcgttcATTCGTCTCAGTTGATACTAGATAATAATGAATCATATTCTTGTCACATATGTATTAATGATGATACCGCTCTGAATTCAGTATGTGAGAATTTTAATACCGATGCGATTCGTCCAGTATGCAACGCtgaaacaaattatacttatCTTTCATCAGAGGATGACGAAAGTTACTGTGCATATTCTATTGCTGATATTAGTGATATCGATGAGCTatcagataataatttaaacgatcGTCAATCTAGTCCTCTTAGGGAACAAACAAGGGTACAAATTAATGGTTCTAGTCCTGGCTATAATTCTAGTTGTGATTCTGAAGCTGATGGAATTGTAACGTTTCTGGACAAGTGTAATAATGAAgcAGAAGCTCGCTTGGCTGCAAGACGTCAAGCCCGCGCTGAAGCTAGAGAAATTCGTATGCGAGAAATTGAACGGCAACAGAAAGAAGCTGAAGAAAATGCAGACAAAGCTTTTGATATGCATGCAGCAgATGGATCTATTATAAATCGAGTTTCACGAGTAGCTGCAAGTACTGCCAGCCCTAGAGCAGCCAGttcaatacataatactaaCAGTTACCAATCTAGTCGTCGTAATTCGGTTGATTCTCTTGATGAATCTACTCCTAATTTTCGAGATTTTAGGatggaATTAAAAGACTTAGAAGAAAAGTTTCGTAAAGCTATGGTACAAAATGCTCAACTTGACAATGAAAAAGCAGCTGTGACATATATGGTAGAATTGTATAAAGACAAGTACACCGATATTGAAGAAGAACTTATgcatataaaacGAGAACATAAAGAGAGTTGTAGagaaaacgaaaaattaaaacgtttattGGCTACTCAAAAACTAGAATCTATAACACTTCAACAAGAACTAGAAGAACGTGATAAACTCATTgaggaaaAAGGTCTAGTAATTATCAGCACAGAACAAGAACATTGGAGTGAGAGTGATCAatgtaatagtaaaataaaacgtgCCTTAGTCTCTGTTGAAAATGCTCAATTGTTACAAGATGCAGGAGAAGGTTGTTTagATGTGCGACTCAAAAAATTTACTGAAGAACGTAACAGCTATATAGACGAAATTAACAGGCTCAAATTAGAGTTGCAAGAAGCTAAACGTCATAGCGATAACCATTATAATGGTACAGACTCGGACGATTTGGAAGATGCCCAAAaagaaACTAATAAAGTTCTTGgtgattataaattcaaatggcAAAAGGCTGAACAAGATATTTCTACATTACAAgctaatgtagCGAGACTTGAGAGTCAagttattagatataaaacaGCTTCTGAAGCATCCGAAAAAGCTGAAGATGAACTGAAATTGGAAAAACGAAAACTACAGCGtgagctTCGAGAAGCTCAAGCAAAAGTTGAAGAATTGGAGACAtctaatatgcatttattaaaacgttttGACAAGTTAAAGAATGCCAAATCCAGTTTActaaaagatttataa
- Protein Sequence
- MNVSSCDLVTGAHITQIYINQTSDNLNEKSLDAKLLVNIPIEFNTSNSTFSSKESSSLYSGSIKNADDRDAVVNILNNVTPYQYSKIVHSSQLILDNNESYSCHICINDDTALNSVCENFNTDAIRPVCNAETNYTYLSSEDDESYCAYSIADISDIDELSDNNLNDRQSSPLREQTRVQINGSSPGYNSSCDSEADGIVTFLDKCNNEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHAADGSIINRVSRVAASTASPRAASSIHNTNSYQSSRRNSVDSLDESTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLATQKLESITLQQELEERDKLIEEKGLVIISTEQEHWSESDQCNSKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNSYIDEINRLKLELQEAKRHSDNHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKRKLQRELREAQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037790;
- 90% Identity
- iTF_01328632;
- 80% Identity
- -