Agly007859.1
Basic Information
- Insect
- Aphis glycines
- Gene Symbol
- lrrfip2
- Assembly
- GCA_009928515.1
- Location
- scaffold:519654-537547[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-99 6.2e-95 318.1 30.9 1 300 218 516 218 516 0.93 2 2 0.0096 1.9e+02 1.3 5.2 121 172 515 566 514 569 0.93
Sequence Information
- Coding Sequence
- ATGAATGATAGTCATATTAAAATGAACGTAACATCGTGTGATCTGGTAACTGCAGGAGCGCATATTACGAACATATACATAAATCAAACTTCGGATAATTTAAATGAAAAATCATTAGATGCTAAATTACTCGTCAATGTACCTGTTGAGTTTAACACAACTAATTCTACGTTTACGTCAAAAGAGTCCCCATCGCTGAGCTCTAGCAGCGTTAATAGTGCGGTCGGTAGGGATGCAGTGGTAAATATCTTAAATAGCGTAACTCCATGTGAATATTCTAAAGTCGTTCATTCGTCTCAGTTGATACTAGATAATAATGGATCATATTCATGTCACATATGTGTTAATGATAATACCGCTCTGAATTCTGTATGCGAGAATTTTAACAGTGATGCGATTCATCCATTATGCAACACTGAAACAAATTATAGTTATTTTTCGTCAGATGACGATGATGGTTATTGTGCATATTCTATTGCTGATATCAGTGATATCGATGAGTTATCAGATAATATTTTAAGTAATCATCAATCTAGCCCTCTTAGGGAACAAACAAAGTTACAAATTATTGGTTCTAGTCATGACTATAATTCCAGTTGTGATTCTGAAGTTGATGGAATTGTAACGTTTCTGGACAAACGTAATAATGAAGCGGAAGCTCGTTTGGCTGCAAGACGTCAAGCCCGTGCTGAAGCTAGAGAAATTCGTATGCGAGAAATTGAACGACAACAAAAAGAAGCTGAGGAAAATGCAGATAAAGCTTTTGATATGCATGCTGCAGATGGACCTATCATAAATCGAGTATCACGAGCAGCTGCAAGTACTGCCAGCCCTAGAACAGCTAGTTCATTACATAATACTAACAGTTACCAATCTAGTCGACGTAATTCGGTTGATTCTCTTGATGAATCTACTCCTAACTTTCGAGATTTTAGGATGGAATTAAAAGACTTAGAAGAAAAGTTTCGTAAAGCTATGGTACAAAATGCTCAACTTGACAATGAAAAAGCAGCTGTGACATATATGGTAGAATTGTACAAAGACAAGTATACTGATATTGAAGAAGAACTTATGCATATAAAAAGAGAACATAAAGAAAGTTGTAGAGAAAACGAAAAATTAAAACGTTTATTGGCTACTCAAAAACTAGAATCTATAACACTTCAACAAGAACTAGAAGAACGTGATAAACTCATTGAGGAAAAAGGATTAGTTATTATCAGCACAGAACAAGAATGTTGGAGTGAGAGTGATCAATGTAATAGTAAAATAAAACGTGCCTTAGTCTCTGTTGAAAATGCTCAATTGTTACAAGATGCAGGAGAAGGTTGTTTAGATGTACGACTCAAAAAATTTACCGAAGAACGCAACAGCTATATAGACGAAATTAACAGGCTCAAATTAGAGTTGCAAGAGGCCAAACGTCATAGTGATAACCATTATAATGGTACAGACTCTGACGATTTGGAAGATGCCCAAAAAGAAACTAATAAAGTTCTTGGTGATTATAAATTCAAATGGCAAAAGGCTGAACAAGATATTTCTACATTACAAGCTAATGTTGCTAGACTTGAGAGTCAAGTGATTAGATATAAAACAGCTTCTGAAGCATCTGAAAAAGCTGAAGATGAATTGAAATTGGAAAAACGAAAACTACAGCGTGAGCTTCGAGAAGCTCAAGCAAAAGTTGAAGAATTGGAGACGTCCAACATGCATTTATTAAAACGCTTTGACAAATTAAAGAATGCCAAATCCAGTTTACTAAAAGATTTATAA
- Protein Sequence
- MNDSHIKMNVTSCDLVTAGAHITNIYINQTSDNLNEKSLDAKLLVNVPVEFNTTNSTFTSKESPSLSSSSVNSAVGRDAVVNILNSVTPCEYSKVVHSSQLILDNNGSYSCHICVNDNTALNSVCENFNSDAIHPLCNTETNYSYFSSDDDDGYCAYSIADISDIDELSDNILSNHQSSPLREQTKLQIIGSSHDYNSSCDSEVDGIVTFLDKRNNEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHAADGPIINRVSRAAASTASPRTASSLHNTNSYQSSRRNSVDSLDESTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLATQKLESITLQQELEERDKLIEEKGLVIISTEQECWSESDQCNSKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNSYIDEINRLKLELQEAKRHSDNHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKRKLQRELREAQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037790;
- 90% Identity
- iTF_01328632;
- 80% Identity
- -