Lwla017036.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388034.1:19610676-19619700[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0074 0.64 11.2 1.6 3 23 204 225 203 225 0.96 2 23 0.16 14 7.0 0.3 1 22 609 630 609 630 0.95 3 23 7.2 6.3e+02 1.8 0.3 1 20 672 691 672 695 0.80 4 23 0.016 1.4 10.2 3.9 2 22 705 725 704 725 0.93 5 23 0.071 6.3 8.1 0.1 2 23 733 755 732 755 0.89 6 23 0.014 1.2 10.4 0.2 3 23 776 797 774 797 0.96 7 23 0.00079 0.069 14.3 3.4 1 23 803 826 803 826 0.95 8 23 0.097 8.5 7.7 0.0 1 23 852 875 852 875 0.90 9 23 0.014 1.3 10.3 3.4 1 23 880 902 880 902 0.97 10 23 0.0067 0.58 11.4 0.2 1 23 908 931 908 931 0.95 11 23 0.0031 0.27 12.4 0.8 1 23 944 966 944 966 0.97 12 23 0.00014 0.012 16.7 1.8 1 23 1016 1039 1016 1039 0.97 13 23 0.0012 0.11 13.7 1.1 1 23 1098 1121 1098 1121 0.96 14 23 0.0018 0.16 13.1 2.1 2 23 1149 1171 1148 1171 0.95 15 23 0.03 2.7 9.3 0.1 2 23 1177 1199 1176 1199 0.94 16 23 0.0076 0.67 11.2 0.2 1 21 1243 1263 1243 1264 0.95 17 23 0.00032 0.028 15.5 1.0 1 23 1274 1296 1274 1296 0.93 18 23 8.6e-05 0.0076 17.3 0.3 2 23 1389 1411 1389 1411 0.93 19 23 3e-07 2.7e-05 25.0 1.4 3 23 1418 1438 1417 1438 0.98 20 23 0.023 2 9.7 0.4 1 23 1456 1478 1456 1479 0.95 21 23 0.11 9.6 7.5 0.0 1 23 1502 1524 1502 1524 0.98 22 23 0.021 1.9 9.8 0.6 1 23 1530 1553 1530 1553 0.95 23 23 0.0002 0.017 16.2 0.4 1 23 1561 1584 1561 1584 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTTGAAAATCAAGGATTGTGTGTCCGTACAGATAAACGAAAATGACGACCTGCCTACTAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCATGTTTTTAAAAATGTGTGTGAAAGGACACAAAACAAACTACAGTCTCTGAAAGATGGCAGCCAACTAGAAGAGGTGAAAATAAAAAGTGAACCACTATCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGCTCATATCCTGTCATTGAGAATGCTGGCTTTTCAAACAAAGTACAACCTGAAGGTCCCCCAATCTTGGCTTCATTGGGGCTCACTCCAAGAAGTGATAAGGGTGCGGAGAGTGAGAATAATGAAGAAGACGAGGAAGAAGTTAATGAGCCCGCTCAAAATTTCCCAAAAATGCCCCACATGCCCGAGGTATCCATCACGGTTATGAGACCCACTGGTGAAACCCTGCACGCTCGCCAAGGTATTCACCAACTCGCCTCCAAACTGTGCCTCGTCTGCGGTCGCTCCTACAGGTACTCTCACAACGCACGCAGACATGAACTTACCTCTCACGGCTTCGACAGGTATACAAACAAAATTACGCCTAAAAAAACCCTCAATCATCTACAACCTAAACTCAGACCAAACCCATTCAACCCCAAAGCACGGATGATGCCGAATCCTATTAGTCATAAGATGCAGTTTATGAACAAGAATATGCCCACAAAAATAATGCCCATGAACAAAATTATAACGCCACAGAAACCCATTCCAATAAAGACGTCAACAAAGACACAAAATAATTTGCCTTATCCCCTACGCATTAAAGCACTCAAAGATTTACAAATTAAGAAAAAGGAGCCTCAGATTCTTAAGACGTTGTTAACATCTAAACCTGAAGTTCTGGTTTCAGAACCAGAAATTTTAAATTCTGGGCCTGAAAGTCCTGAAACATTGATATCTGAGCCTGAAATCGCGTCTTTTCAAGTCGAAACGATTCTTACGGAACCCGACGCCGACGCGTATGATGATCCTCAGCAAGGCGACGAAGAAGTTGATGAAGAAATACAGAACAATCAAAGTCAGAACTATGACACAGTCGATATGGACTCTGAAAATGAAATAGAGATTGCTCGTCAGCAAGGCATGGAACACGACGGTGAGGAAAATGCTGACGGGGAAGAGAATATCGATCATGATGACGACAACAATATGGAAGGCGCTCAGAGCGATAACGAGAAAGATGGCAATGACGATACAGCTGAAAGTCAGGAGAACATAGATGAAGAAGATAGTGTTGATGTTAAACCTGAAGATCAAATGAAGGAGGACGAGGATCAAGAGGAGGCTGAACATGAAGAAGTGGAGTTGAATCATAACGAGAACGAGGAAGATGATGATGATGAGCTTCCGATATCATTAGCGCCAGTCGTCGAGATAAATGAAGGATTGCAAGCCAACTCGTTTAACAACGAAGTCAATGAAGAAGACGAGGAGCTCGACGAAACTGTCGACCCTAATGAAACCATCGAAGATGAGGAGGTTAAAGAACTTGACCCCGACAAAACATATGTTACTAAAACCCAAAGAGATTTCATACAAAAATATCGCGACATCATTCAGCAAATCAACACGAAGCGCTGTTTGTGTTGTGACCGTGAACATCCGCGTAGGAAAGCTGTTATACAACACTTGCAGAAAAACGGACACAAGGTACCGAAACACACTTGTTACAATTGTGTCATCACGTTCGGACATATTGGCGCACTACTCAGCCATATGAGGTCGAATTCTTGCACTAATCTGTGGAAGATAATTTACAATGAAAATGGCATTACTGACGACTTGGTTCTCGAAGATGAGCCGAAAGAGGTCAAGGTGGCTTACAAAGATATTTTCAATGCTAGGTCATACGCTTGCAAGCTCTGCCCAGCTAAATTCCAACTGAAACAGTTTATCATGAAGCATGTAGCAGATACTCATGAAGATGGCCAGTCTAGGGTAGCGCTCTGCTGTGTTCACTGCCGCGCTAGGTTTAAAGAAAAGAGTTTACTGAAGAAGCACATTCGCAAAGGTGATTGTACAGTTTATATATCTTGTGATTTGTGCTCAGAAACGTTCAGGAACATGCAGGACTTCAACGATCATGCGCTAGCCATCCACGCTGGCAGTTTCGATCAGTCGGATAATCAGAGTAAATGTGTTGATGGTCGGCCAACCGACTGTCCTTTGTGCGGAAAGAAAAACAGCAGTTATCCGAATTTAGTGAAACATTTGAAGATTATACACGCGGAGGAGAAACCTCACTACTGCCAACATTGCGACGCTAAATTCGAACAATCTAATGATCTGAACAAACATATTTACATGGAGCATTCTGACAGAACTTTAGGCATGCCGACCGCAGGGCCGGATATGTCTATAGTGAAGGAAGAAGCGGAGGAGTACCATTACTCTTGCACAGAATGTAATGCTATATTCGAAACGGTTGATGCGTGGACTGATCACCAAGTCGCCGAACACAACCAGGTGGCCCACCACTGTGACCAGTGTGAGAAGAAGTTCCTGCGTCCGTCAGAGCTAGCCGAGCATAAGAACACTCACCTGAGGGTTAAGTTCTATCCTTGCAGTGTATGCCCTAACTCATACAGCACTCCGCAAAAACTATCGGAGCATGTGCAACAGTCACATCCAGGAATTGGCGCCGTCGCGGCAGCTGAGTCGGAATTCTTCTGCGACATTTGCATCAGAGCATTCAAAAGTCGCCAAGCATACTCAAACCATATGCGCATTCACGCTAAAGTACCGACTACTAACAGGAAACCTATTGCAGGTAAAGAGGGATTCGCGCCTCAAATTATAGGGAAACCCATCAAACAATATCCTGTGGTTCAACCTGGTTTTGTGTCATTTAAACCGAACTACAACATCCCTAACGCTCCATATTCTTGCGACATTTGTGGTAAAGGATTCATGCACAAGAAGAATATATGGAAACACAAGAAAGTGTTGCATGCCGATATTTTAGTCGATAGACATGATAGTGAAGAGAACACTATGCAAGCATCCACTGAAGAGGAGGAATTCAACCCCGATGAAAACGGAGCCATTCTCTCAACGCCACAATTTAACAGTTTTAATTTTACGAACTTCGCGAACAATGCTCAACAAACGCCACCAGACATGCCTTTTGAATGTGATTTATGTAGCAAACGGTTCCCGCTTAGGACCAGTTTGTGGAAACACAAGCGCGCTAAACATGGAATTGTAAACCCTAGCACTAGTGGTAACAACGATGTAACATCCACGCCATCCGCTAGCGGGGAAGGCAGTAGTAGATCTAGCTGCACTATATGTAGAATCACATTTTCAGACAAGAAATCTTATTATCGCCATCGAAAGAATGTCCACAAATCTACCGTTCAAATGTGCAAAATATGCGGCAAACCGTTAAGTTCAACTTTGGAACTATACGAGCACTTGAAAGCCGCTCATGCAAGAGAATTACTTGGCTATAACGCTAATCAAGGCTCCAGTAAATCACAAGATGTGTCCCAAGATGTTGAACCTGATTATGAAAATGATCAGGAATCAGCCGACCCTAGCGTCGATTACCAAGCGCGCTACCCATGCGATACCTGTGGCAAACAATTCGTTGGTCTACTAGCGTTGCAGAACCACCAGTGCATCAACCAGGTGCCATCACAACCACAGACTTTTGACTGCGAGATTTGTCACAAGAGTTACACTTCAATATCTGCATTAAAAAGCCACCGTGGATGGCATTTACGTTCGCCCGATGGAAAGGCAGCTGCCAACAATTCTGGCCTTTGGATGCCTCAGCACAAAGTTACTAGCAAGATAAGTAAACACGAAGTCATCGACGCATCTCAACTTGCGAAGGTCACACATACTCCCACTCCCCCTCCTGTCACAGCGACTGCAGCGAAAAGAAGACTACCACCGGAGGTCGAAGTGACAGTCGTAAACCCCAACAAGAAATTGCGCTCAGACGACTCGGTCGACATGGATTTACAAAATTCTGGTTCAATCGAGGATAGATACTGTACGATTTGCGACAAGGAATTTACAAAACGAGCAGCTTATCAGCGCCACATGGACGAAGTACATCAACCGAACTCTGTGTTTTGTCCGGTCTGTGATAAGAGTTTTACAAGGAAGTCGACATTGCTCATTCACATGAAGAAGCACTACGAGAGTGGTGAGGGCAGTTCCTCTGCTACAGGTCAGGGAGACGATGATTTCTCATGCGATTTGTGTGGCGCTCAGTATGATAATGATCAGGCGTTGAGGGCACACCGAGCGCGGCACCATGGAGAAGATGAAGAGTCGGCAGAAGAGAGTGATGACGGAAATGTTCCTATCGCCCCTCCCGGTGAATTCACATGTGCGCAATGCGGCGATGGCGTCGCCACTCCCAGGGACCTCATCGCCCATCGCTCCATGCACGCTACTCCCACCAAGTTCTTCTGTAACATATGCAAAGTGTATTTCGCTCGGGCGCTCGACCTGTCGTCGCACACTCGGGCGCGACACGCTGACAACGAAAAGGTATTCTTCCCGTGTGCCATGTGCGACAGGTTTTACATGAACAAAAAGAGTTTACAGCGGCACATCGAGATGGCGCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLALKIKDCVSVQINENDDLPTNVCRKCMDNVNNWHVFKNVCERTQNKLQSLKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYPVIENAGFSNKVQPEGPPILASLGLTPRSDKGAESENNEEDEEEVNEPAQNFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKLCLVCGRSYRYSHNARRHELTSHGFDRYTNKITPKKTLNHLQPKLRPNPFNPKARMMPNPISHKMQFMNKNMPTKIMPMNKIITPQKPIPIKTSTKTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILTEPDADAYDDPQQGDEEVDEEIQNNQSQNYDTVDMDSENEIEIARQQGMEHDGEENADGEENIDHDDDNNMEGAQSDNEKDGNDDTAESQENIDEEDSVDVKPEDQMKEDEDQEEAEHEEVELNHNENEEDDDDELPISLAPVVEINEGLQANSFNNEVNEEDEELDETVDPNETIEDEEVKELDPDKTYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEDEPKEVKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVADTHEDGQSRVALCCVHCRARFKEKSLLKKHIRKGDCTVYISCDLCSETFRNMQDFNDHALAIHAGSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHAEEKPHYCQHCDAKFEQSNDLNKHIYMEHSDRTLGMPTAGPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGIGAVAAAESEFFCDICIRAFKSRQAYSNHMRIHAKVPTTNRKPIAGKEGFAPQIIGKPIKQYPVVQPGFVSFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMQASTEEEEFNPDENGAILSTPQFNSFNFTNFANNAQQTPPDMPFECDLCSKRFPLRTSLWKHKRAKHGIVNPSTSGNNDVTSTPSASGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQDVSQDVEPDYENDQESADPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDASQLAKVTHTPTPPPVTATAAKRRLPPEVEVTVVNPNKKLRSDDSVDMDLQNSGSIEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDFSCDLCGAQYDNDQALRAHRARHHGEDEESAEESDDGNVPIAPPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00784583; iTF_00383914; iTF_01363312; iTF_01361885; iTF_01026579; iTF_01028531; iTF_00822196; iTF_00925046; iTF_00446424; iTF_00040092; iTF_01487900;
- 90% Identity
- iTF_00784583; iTF_00383914; iTF_01026579; iTF_00925046; iTF_00446424; iTF_00040092; iTF_01361885; iTF_01363312;
- 80% Identity
- -