Sexi000448.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022056.1:11169658-11180071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0033 0.26 12.2 1.0 3 23 206 227 205 227 0.96 2 23 0.14 11 7.0 0.3 1 22 618 639 618 639 0.95 3 23 5.1 4e+02 2.1 0.4 1 22 681 702 681 704 0.82 4 23 0.00037 0.03 15.1 1.7 2 22 714 734 713 734 0.94 5 23 0.51 40 5.3 0.0 3 23 743 764 741 764 0.90 6 23 0.012 0.94 10.4 0.2 3 23 785 806 783 806 0.96 7 23 0.0025 0.2 12.5 3.5 1 23 812 835 812 835 0.95 8 23 0.085 6.7 7.7 0.0 1 23 860 883 860 883 0.90 9 23 0.013 1 10.3 3.4 1 23 888 910 888 910 0.97 10 23 0.057 4.6 8.2 0.0 1 23 916 939 916 939 0.95 11 23 0.0016 0.12 13.2 1.3 1 23 952 974 952 974 0.97 12 23 0.00012 0.0095 16.7 1.8 1 23 1023 1046 1023 1046 0.97 13 23 0.0021 0.17 12.8 1.8 1 23 1106 1129 1106 1129 0.96 14 23 0.0016 0.13 13.1 2.1 2 23 1157 1179 1156 1179 0.95 15 23 0.027 2.1 9.3 0.1 2 23 1185 1207 1184 1207 0.94 16 23 0.0067 0.53 11.2 0.2 1 21 1251 1271 1251 1272 0.95 17 23 0.00028 0.023 15.5 1.0 1 23 1282 1304 1282 1304 0.93 18 23 7.6e-05 0.006 17.3 0.3 2 23 1395 1417 1395 1417 0.93 19 23 2.1e-06 0.00016 22.2 1.5 3 23 1424 1444 1423 1444 0.97 20 23 0.02 1.6 9.7 0.4 1 23 1463 1485 1463 1486 0.95 21 23 0.12 9.9 7.2 0.0 1 23 1509 1531 1509 1531 0.97 22 23 0.019 1.5 9.8 0.6 1 23 1537 1560 1537 1560 0.95 23 23 0.00017 0.014 16.2 0.4 1 23 1568 1591 1568 1591 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTAGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCCGATGACTCGGAACCTCCCGTCCTCGCTTTGAAAATCAAGGATTGTGTGTCCATTCAGATAAACGAAAATGACGATCTGCCCACTAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCATGTGTTTAAAACTGTTTGTGAAAGGACACAAAACAAACTACAGTCTCTAAAAGATGGCAGCCAACTAGAAGAGGTGAAAATCAAAAGTGAACCATTATCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGCTCATATCCTGTCATTGAGAATGCTGGCCTGTCAAACAAAGTGCAGCCTGAAGGTCCCCCAATCTTGGCTTCATTGGGGCTCACACCAAGAAGTGATAAGGGTGCAGAAAGTGAGAACAACGATGAAGACGAGGAGGAAGCTAATGAACCGGAACCTGCACAAACATACCCGAAAATGCCGCATATGCCGGAGGTGTCCATCACGGTCATGAGGCCTACCGGTGAAACACTGCACGCACGCCAAGGTATCCACCAGTTGGCCTCCAAAGACTGTCTTGTCTGTGGCCGCTCATATAGGTACTCTCACAATGCTCGTCGACATGAACTCACTGCTCACAGCTTCGAcagatatacaaataaaattactccCAAGAAAACTCTCACTCATCTACAACCCAAACTCAGACCAAACCCATTCAATCCCAAAGCACGGATGATGCCGAAGCCTATTAGTCATAAGATGCAATTCATGAACAAAAACATCCCAGCCAAAATAATGCCTGTAAACAAAGTTATCACGCCTCAGAAACCCATACCAATAAAGTCTTCAAAGACGACGGCAAACAATTTGCCTTATCCATTGCGTATAAAAGCACTTAAAGATTtacaaattaagaaaaaagaacCACAAATTCTAAAGACTTTGTTGACCTCTAAACCTGAAGTTTTGGTTTCCGAACCAGAAATTCTCAATTCTGGTCCTGAAAGTCCAGAGACACTGATTTCTGAGCCAGAAATAGCATCTTTCCAAGTTGAAGCTATTCTAACTGAGCCCGACGCCGATGCATACGAGCCACAAGATGCACAGCAAGGCGACGAAGAAGGCGATGAAGACATGAACAATCAGGGTCAACATTATGACACAGTTGATATGGACTCTGAAAACGAAATAGAAATTGCTCGTCAACAGGGGATGGAACAAGATGGTGAAGACAATCTTGACGGAGAAGAGAATATCGAGCAAGGTGACGAGGATAATAACATGGAAGGAGGTCAAAGCGACAATGAAAAAGATGGTAATGATGACACAGCGGAAAGTCAAGAGAATATGGAAGAGGAGGACAGCATGGATATTAAGCCTGAAACTGAATGTCATATGAAAGATGACGAAGGCCAAGAAGATAGAGAACACGAGGAATCTGAGATGAATCATAATGAAAACGAAGAGGAAGATGATGACGATGACCTTCCCATGTCATTAGCGCCTGTCGTTGAAATTAATGAGGGTCTGCAAGGTAATTCCTTTAATAGTGAAGTAAATGAAGATGATGAAGAGCTTGACGAGACGGCAGACCCCAATGAGACCCTTGAAGAAGAAGAGCCCGAGCCTAAAGTACTCGATCCTGACAAGACCTATGTTACAAAAACTCAAAGAGATTTCATACAGAAATATCGTGACATCATTCAACAAATTAACACGAAACGTTGTTTATGTTGCGACCGCGAACATCCTCGTAGGAAAGCCGTTATACAACATTTACAGAAGAACGGACACAAAGTACCGAAACATACTTGTTACAATTGTGTCATCACATTCGGGCATATTGGTGCCTTGCTCAGCCATATGAGGTCGAATACGTGCACTAATCTGTGGAAGATTATTTACAATGAAAATGGTATCACGGATGATCAAGTGCTTGAAGACGAACCGAAAGAAGTCAAGGTTcaatacaaagatatttttaacgCCAGATCTTACGCATGCAAGCTCTGCCCAGCCAAATTCCAgcttaaacaatttattatgaaGCATGTATTAGATACACATGAAGATGGACAGTCTCGGGTACCGCTTAGCTGTGTCCACTGCCGTGCTAGATTCAAAGATAAAAGTTTACTCAAAAAACACATCCGTAAGGGCGATTGTACAGTTTATGTAGCGTGCGACTTGTGCTCAGAAAAGTTCGTGAACATGCAGGACTTTAACGACCACGCTTTAGCCGTTCATGCTGACAGTTTCGACCAATCTGATAACCAGAGCAAATGTGTAGACGGCCGACCAACTGACTGTCCACTATGCGGGAAGAAGAACAGTAGCTATCCTAATTTAGTGAAACATTTGAAGATAATACACAGTGAAGAGAAACCTCATTATTGCCAGCACTGTGATTCTAAATTCGAACAAGCTACAGATCTGAATAAACACATTTACATGGAGCATTCTGATAGAACATTAGGCATGGTTTCTGAACCAGACATGTCTATTGTGAAGGAAGAGGCAGAAGAGTACCACTACTCGTGCACGGAATGCAATGCTATTTTCGAAACTGTTGATGCATGGACAGATCACCAAGTGGCAGAACATAATCAAATAGCTCACCACTGCGACCAGTGTGAGAAGAAATTCCTACGTCCTTCAGAGCTGGCAGAGCATAAGAACACTCACTTGCGGGTTAAATTCTACCCCTGCAGTGTGTGTCCTAACTCTTACGGCACCCCACAGAAACTTTCTGAACACGTGCAAGAGGCACATGCAGGTCTTGGTCCGGTTGTACCCGCAGAGGCTGAATTTTTCTGTGATATCTGCATTAGATCATTCAAAAGCCGTCAGGCTTATTCAAATCATATGCGCATTCACGCTAAAGTACCCACTACCAACAGGAAGCCAGGTGTCGTTAAGGGTTCGGCGCCCCAAATTGTTGTTAAGCCCATCAAGCAATACCCGGTGGCTCAGCCTGGTTTCTCATGGTTTAAACCCAATTACAATATTCCTAACGCTCCATACTCTTGTGACATTTGTGGGAAAGGGTTCATGCACAAGaagaatatttggaaacatAAGAAAGTATTGCATGCTGATATTTTGGCCGACAGACATGATAGTGAAGAAAATACGATGCAAGCTTCAACAGAAGAGGAGGAATTCAACCCTGACGAGAACGGTGCCATTTTATCTACGCCtcaatttaatagttttaatttcaCAAATTTCCCGAACAATGTACAACAATCGACTCCAGAAACAATGCCATACTCATGTGAACTGTGCTTCAAACGGTTCCCACTTAAGACCAGTTTGTGGAAACACAAGCGTGCTAAACACGGAATTGTAAATCCTGGTACTAGTGGTAGCAACGACACTGCGGCTGCATCGGCTAGCGGTGGCGAGGGCAGTAGTAGGTCTAGCTGCACTATATGCCGAATTACATTTTCCGATAAGAAATCTTATTATCGCCATCGAAAAAATGTCCACAAATCTACAGTTCAAATGTGCAAAATATGCGGCAAACCTCTATCTTCAACATTAGAATTATATGAACATTTGAAGGCTGCACACGCCAGAGAGCTATTGGGTTATAACGCTAATCAGGGTTCCAGCAAATCCCAAGATATGACACAAGAAGTAGAACCTGATTATGAAAACGATCAGGAATCTGCAGATCCTAGTGTTGATTACCAAGCGCGGTACCCGTGTGACACTTGCGGTAAACAATTTGTTGGTTTGTTAGCGTTACAAAACCATCAGTGTATCAATCAAATGCCAGCGCAGCCGCAGACATTTGACTGCGAGATTTGTCACAAGAGCTATACATCAATTTCGGCTCTAAAAAGTCATCGCGGTTGGCATTTACGTTCGCCTGATGGTAAAGCAGCTGCCAATAATTCTGGACTTTGGATGCCTCAACACAAAGTTACCAGTAAAATAAGCAAGCATGAAGTAATTGATCCTTCACAATTAGCCAAGGTCACACATACCGCAACGCCTGTAAGTGCTAGTGTTGCTAAGAGAAGGCTACCGCCAGAAGTGGAAGTGACAGTTGTAAACCCGAATAAGAAGTTACGATCAGATGACTCAGTGGACATGGATACGCAAAATTCTGGTTCTATAGAAGATAGGTACTGTACGATTTGTGATAAAGAGTTTACGAAAAGGGCGGCGTATCAACGTCACATGGATGAAGTGCATCAACCGAATTCGGTATTTTGTGCGGTCTGTGATAAGAGTTTTACGAGGAAGTCGACGTTGCTTATTCATATGAAAAAGCACTATGAGAGTGGGGAGGGTAGTTCATCGGCCACTGGCCAAGGGGACGATGATATGTTCTCTTGTGACTTGTGTGGCGCTCAGTATGATAATGATCAAGCTTTGAGGGCGCATCGAGCAAGGCATCACGGTGAAGAAGAAGATTCAGCAGAAGAGAGTGATGACGGAAATGTTCCTGTACCTCCTCCTGGAGAATTCACCTGTGCACAATGTGGTGATGGCGTAGCCACTCCTCGAGACCTCATCGCCCACCGCACTATGCACGCTACTCCCACCAAattcttttgtaatatttgcAAAGTGTATTTCGCTCGAGCGCTTGACCTGTCGTCGCACACGCGTGCGCGACACGCTGACaacgaaaaagtttttttccCGTGTGCCATGTGCGATAGGTTTTATATGAACAAAAAGAGCTTACAGCGGCACATCGAAATGGCTCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLALKIKDCVSIQINENDDLPTNVCRKCMDNVNNWHVFKTVCERTQNKLQSLKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYPVIENAGLSNKVQPEGPPILASLGLTPRSDKGAESENNDEDEEEANEPEPAQTYPKMPHMPEVSITVMRPTGETLHARQGIHQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITPKKTLTHLQPKLRPNPFNPKARMMPKPISHKMQFMNKNIPAKIMPVNKVITPQKPIPIKSSKTTANNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILTEPDADAYEPQDAQQGDEEGDEDMNNQGQHYDTVDMDSENEIEIARQQGMEQDGEDNLDGEENIEQGDEDNNMEGGQSDNEKDGNDDTAESQENMEEEDSMDIKPETECHMKDDEGQEDREHEESEMNHNENEEEDDDDDLPMSLAPVVEINEGLQGNSFNSEVNEDDEELDETADPNETLEEEEPEPKVLDPDKTYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNTCTNLWKIIYNENGITDDQVLEDEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRVPLSCVHCRARFKDKSLLKKHIRKGDCTVYVACDLCSEKFVNMQDFNDHALAVHADSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHSEEKPHYCQHCDSKFEQATDLNKHIYMEHSDRTLGMVSEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYGTPQKLSEHVQEAHAGLGPVVPAEAEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGVVKGSAPQIVVKPIKQYPVAQPGFSWFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILADRHDSEENTMQASTEEEEFNPDENGAILSTPQFNSFNFTNFPNNVQQSTPETMPYSCELCFKRFPLKTSLWKHKRAKHGIVNPGTSGSNDTAAASASGGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQDMTQEVEPDYENDQESADPSVDYQARYPCDTCGKQFVGLLALQNHQCINQMPAQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPSQLAKVTHTATPVSASVAKRRLPPEVEVTVVNPNKKLRSDDSVDMDTQNSGSIEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCAVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDMFSCDLCGAQYDNDQALRAHRARHHGEEEDSAEESDDGNVPVPPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852035;
- 90% Identity
- iTF_00852035;
- 80% Identity
- -