Slit002028.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NC:4869691-4880352[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0032 0.18 12.2 1.0 3 23 206 227 205 227 0.96 2 23 0.14 7.8 7.0 0.3 1 22 617 638 617 638 0.95 3 23 4.9 2.8e+02 2.1 0.4 1 22 680 701 680 703 0.82 4 23 0.00027 0.016 15.5 1.8 2 22 713 733 712 733 0.95 5 23 0.49 28 5.3 0.0 3 23 742 763 740 763 0.90 6 23 0.012 0.65 10.4 0.2 3 23 784 805 782 805 0.96 7 23 0.00054 0.03 14.6 2.7 1 23 811 834 811 834 0.95 8 23 0.083 4.7 7.7 0.0 1 23 859 882 859 882 0.90 9 23 0.012 0.7 10.3 3.4 1 23 887 909 887 909 0.97 10 23 0.056 3.2 8.2 0.0 1 23 915 938 915 938 0.95 11 23 0.0015 0.086 13.2 1.3 1 23 951 973 951 973 0.97 12 23 0.00012 0.0066 16.7 1.8 1 23 1022 1045 1022 1045 0.97 13 23 0.002 0.11 12.8 1.8 1 23 1105 1128 1105 1128 0.96 14 23 0.0016 0.088 13.1 2.1 2 23 1156 1178 1155 1178 0.95 15 23 0.026 1.5 9.3 0.1 2 23 1184 1206 1183 1206 0.94 16 23 0.0065 0.37 11.2 0.2 1 21 1250 1270 1250 1271 0.95 17 23 0.00028 0.016 15.5 1.0 1 23 1281 1303 1281 1303 0.93 18 23 7.4e-05 0.0042 17.3 0.3 2 23 1394 1416 1394 1416 0.93 19 23 2.6e-07 1.5e-05 25.0 1.4 3 23 1423 1443 1422 1443 0.98 20 23 0.015 0.86 10.0 0.2 1 23 1462 1484 1462 1485 0.95 21 23 0.12 6.9 7.2 0.0 1 23 1508 1530 1508 1530 0.97 22 23 0.018 1 9.8 0.6 1 23 1536 1559 1536 1559 0.95 23 23 0.00017 0.0095 16.2 0.4 1 23 1567 1590 1567 1590 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTAGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCCGATGACTCGGAACCTCCCGTCCTCGCTTTGAAAATCAAGGATTGTGTGTCCATTCAGATAAACGAAAATGACGATCTGCCCACTAATGTCTGCAGGAAGTGCATGGACAATGTCAATAACTGGCATGTATTTAAAACTGTTTGTGAAAGGACACAAAACAAACTACAGTCTCTAAAAGATGGCAGCCAACTAGAAGAGGTGAAAATAAAGAGTGAACCATTATCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGCTCATATCCTGTCATTGAGaATGCTGGCCTATCAAACAAAGTGCAACCTGAAGGTCCCCCAATCTTGGCTTCGTTGGGGCTCACACCAAGAAGTGATAAGGGTGCGGAGAGTGAGAACAACGATGAAGACGAGGAAGAAACTAATGAACCTGAACCCGCACAAACATACCCGAAAGTGCCTCATATGCCGGAGGTGTCTATCACGGTCATGAGGCCTACCGGCGAAACCCTGCATGCACGTCAAGGTATTCACCAGTTAGCCTCAAAAGACTGTCTAGTCTGTGGTCGCTCATATAGGTACTCTCATAATGCTCGTCGACATGAACTTACTGCTCATAGCTTCGACagatatacaaacaaaattacgCCCAAGAAAACACTCACTCATCTACAACCCAAACTCAGACCAAACCCATTCAATCCCAAAGCACGGATGATGCCGAATCCTATTAGTCATAAGAtgcaatttttaaacaaaaacatccCGGCCAAAATTATGCCGGCAAACAAAGTTATAACGCCTCAGAAACCCATTCCAATAAAGACGTCAAAAACGACGCCAAATAATTTGCCTTATCCATTACGTATTAAAGCGCTCAAAGATTTACAAATTAAGAAAAAGGAACCACAAATTCTAAAGACCTTGTTAACCTCGAAACCTGAAGTTTTGGTTTCCGAACCAGAAATTCTTAATTCTGGACCTGAAAGTCCGGAGACACTGATTTCTGAGCCTGAAATAGCATCTTTCCAAGTCGAAGCTATTCTGACTGAGCCGGATGCTGACGCATACGACCCACAAGATGTACAGCAGGGCGACGAAGAAGGCGATGAAGATATGaacaatcaaagtcaaaattatgaTACTGTTGATATGGATTCTGAAAACGAAATAGAAATTGCTCGTCAACAAGGAATGGAGCAAGATGGCGAAGACAATGTTGACGGAGAAGATAATATCGAGCAAGGTGACGATGATAACAATATGGAAGGAGGCCAAAGCGACAACGAAAAAGATGGCAATGACGACACAGCAGAAAGTCAAGAGAATATGGAAGAGGAGGACAGTATGGATGTTAAACCTGAAACTGAAGGTGATATGAAGGATGATGAGGGTCAAGAAGACGGAGAACACGAGGAATCCGAAATGAATCATAATGAGAACGAAGAGGAAGATGATGATGACCTTCCTATGTCATTGGCACCCGTCGTTGAAATTAATGAAGGAGTTCAAGGTAACTCATTTAATAGTGAAGTCAACGAAGATGATGAAGAACTTGATGAGACAGCCGACCCCAATGAGACCCTTGACGATGAAGAGCCCGAGCCCAAAGTACTTGATCCTGACAAGACCTATGTTACAAAAACTCAAAGAGATTTCATCCAGAAATATCGTGACATCAttcaacaaattaacacgaagCGTTGTTTATGTTGCGACCGTGAACATCCACGTAGGAAAGCCGTGATACAACATTTACAAAAGAACGGACACAAAGTGCCCAAACATACTTGTTACAATTGTGTCATCACGTTCGGACATATTGGTGCCTTGCTAAGCCATATGAGGTCGAATACGTGCACTAACTTGTGGAAGATTATTTACGATGAAAATGGCATCACTGACGATCAAGTACTGGAAGACGAACCTAAAGAAGTCAAGGTCCAATACAAAGATATCTTTAACGCCAGATCTTACGCCTGCAAGCTTTGCCCAGCCAAATTCCAgcttaaacaatttattatgaaGCATGTCTTAGATACTCATGAAGATGGACAATCCCGGGTGCCGCTTACCTGTGTCCACTGCCGTGCTAGATTCAAAGATAAAAgtttacttaaaaaacacaTCCGTAAAGGAGATTGCACAGTTTATGTAGCCTGCGACTTGTGTTCAGAAAAGTTCGTGAACATGCAGGACTTCAATGATCACGCTTTAGCCGTTCATGCCGGCAGTTTCGACCAATCTGATAATCAGAGCAAATGTGTGGATGGCCGACCAACTGACTGTCCACTATGTGGAAAGAAAAACAGTAGCTATCCTAATTTAGTGAAACATTTGAAGATAATACACAGTGAAGAGAAGCCCCATTATTGTCAGCATTGTGATGCTAAATTTGAACAAGCTACAGATCTgaataaacacatttatatGGAGCATTCTGATAGAACTTTAGGCATGGTTGCTGAACCAGATATGTCTATTGTGAAGGAAGAAGCAGAAGAGTATCACTACTCGTGCACGGAATGTAACGCTATTTTCGAAACTGTTGATGCATGGACAGACCACCAAGTGGCAGAACATAATCAAATAGCCCACCATTGCGACCAATGTGAGAAGAAGTTCCTACGTCCCTCAGAGCTGGCAGAGCATAAGAACACTCACTTGCGGGTTAAATTTTATCCCTGCAGTGTGTGTCCGAACTCTTACGGCACCCCGCAGAAACTATCTGAACACGTGCAAGAGGCACATGCAGGTCTCGGTCCAGTTGTACCCACAGAGGCTGAATTCTTCTGCGATATCTGCATAAGATCGTTCAAAAGCCGGCAGGCTTATTCAAATCATATGCGCATTCACGctaaagtacctactactaaCAGAAAGCCAGGTATAGTTAAGGGCTCTGCACCTCAAATTGTTGTTAAGCCCATCAAGCAATACCCGGTGGCTCAACCTGGATTTTCATGGTTTAAACCTAATTACAATATTCCTAACGCTCCATACTCTTGTGACATTTGTGGGAAAGGATTCATGCACAAGAAGAATATTTGGAAACATAAGAAAGTTTTGCATGCTGATATTTTGGCTGATAGACACGATAGTGAAGAGAATACCATGCAAGCTTCCACGGAAGAGGAGGAATTCAACCCAGACGAGAACGGTGCCATTCTATCTACGCCtcaatttaatagttttaatttcacaAATTTCCCGAACAATGTACAACAATCGAATACAGAAACAATGCCATACTCGTGTGAACTGTGCTTCAAACGTTTCCCACTTAAGACCAGTTTGTGGAAACACAAGCGTGCTAAACACGGAATCGTAAATCCTGGTACTAGTGGTAGCAATGACACTACGACTCCATCGGCTAGCGGCGGAGAAGGCAGTAGTAGGTCTAGCTGCACTATATGTAGAATCACATTTTCCGATAAGAAATCTTATTATCGCCACCGAAAAAATGTTCACAAATCTACAGTTCAAATGTGCAAAATATGTGGTAAACCTCTAACTTCAACCTTAGAATTATATGAACATTTGAAAGCTGCGCACGCCAGAGAACTGTTGGGTTACAACGCTAATCAAGGTTCCAGTAAATCTCAAGATATGACCCAAGAAGTAGAACCTGATTATGAAAATGATCAGGAATCTGCAGATCCAAGTGTTGATTATCAGGCGCGATACCCGTGTGACACGTGCGGCAAACAATTTGTTGGTTTGTTAGCATTACAAAACCACCAATGTATCAACCAACTTCCTGCTCAGCCGCAGACATTTGACTGTGAGATTTGTCATAAGAGTTATACATCAATTTCTGCACTAAAAAGTCATCGTGGTTGGCATTTACGTTCGCCTGATGGTAAAGCAGCTGCCAACAATTCTGGACTTTGGATGCCTCAGCACAAAGTAACTAGTAAAATAAGCAAACATGAAGTTATTGATCCTTCACAACTTGCTAAGGTCACACATACCTCAACACCTGTGAGTGCAAGTGTTGCTAAAAGAAGGTTACCGCCAGAAGTGGAAGTAACAGTTGTGAACCCGAATAAGAAATTACGATCAGATGACTCGGTGGACATGGATACGCAAAACTCTGGTTCCATTGAGGATAGGTACTGTACGATTTGTGACAAAGAGTTTACGAAACGAGCGGCATACCAACGTCACATGGATGAGGTGCATCAACCTAATTCGGTATTTTGTCCGGTCTGTGATAAGAGCTTTACAAGAAAGTCGACGTTGCTTATTCATATGAAGAAGCATTATGAGAGTGGTGAAGGTAGTTCTTCGGCCACGGGCCAAGGGGACGATGATATGTTCTCTTGTGATTTGTGTGGCGCCCAGTATGATAGTGATGAAGCGTTGAGAGCGCATCGAGCGAGGCATCATGGTGAAGAAGAAGAATCTGCGGAAGAGAGTGACGACGGAAATGTTCCTGTGCCTCCTCCAGGAGAATTCACTTGTGCACAATGTGGTGATGGCGTGGCCACTCCCCGAGACCTCATCGCCCACCGCACTATGCATGCCACACCCACCAAATTCTTCTGTAATATTTGTAAAGTGTATTTCGCTCGTGCGCTGGACTTGTCGTCGCACACACGTGCGCGACACGCCGACAACGAAAAAGTTTTTTTCCCGTGTGCCATGTGCGATAGgttttatatgaacaaaaagAGCTTACAGCGGCACATCGAAATGGCTCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLALKIKDCVSIQINENDDLPTNVCRKCMDNVNNWHVFKTVCERTQNKLQSLKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYPVIENAGLSNKVQPEGPPILASLGLTPRSDKGAESENNDEDEEETNEPEPAQTYPKVPHMPEVSITVMRPTGETLHARQGIHQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITPKKTLTHLQPKLRPNPFNPKARMMPNPISHKMQFLNKNIPAKIMPANKVITPQKPIPIKTSKTTPNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILTEPDADAYDPQDVQQGDEEGDEDMNNQSQNYDTVDMDSENEIEIARQQGMEQDGEDNVDGEDNIEQGDDDNNMEGGQSDNEKDGNDDTAESQENMEEEDSMDVKPETEGDMKDDEGQEDGEHEESEMNHNENEEEDDDDLPMSLAPVVEINEGVQGNSFNSEVNEDDEELDETADPNETLDDEEPEPKVLDPDKTYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNTCTNLWKIIYDENGITDDQVLEDEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRVPLTCVHCRARFKDKSLLKKHIRKGDCTVYVACDLCSEKFVNMQDFNDHALAVHAGSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHSEEKPHYCQHCDAKFEQATDLNKHIYMEHSDRTLGMVAEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYGTPQKLSEHVQEAHAGLGPVVPTEAEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGIVKGSAPQIVVKPIKQYPVAQPGFSWFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILADRHDSEENTMQASTEEEEFNPDENGAILSTPQFNSFNFTNFPNNVQQSNTETMPYSCELCFKRFPLKTSLWKHKRAKHGIVNPGTSGSNDTTTPSASGGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLTSTLELYEHLKAAHARELLGYNANQGSSKSQDMTQEVEPDYENDQESADPSVDYQARYPCDTCGKQFVGLLALQNHQCINQLPAQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPSQLAKVTHTSTPVSASVAKRRLPPEVEVTVVNPNKKLRSDDSVDMDTQNSGSIEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDMFSCDLCGAQYDSDEALRAHRARHHGEEEESAEESDDGNVPVPPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852035;
- 90% Identity
- iTF_00852035;
- 80% Identity
- -