Tni012731.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- -
- Assembly
- GCA_003590095.1
- Location
- NC:2449034-2460285[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0033 0.17 12.2 1.0 3 23 205 226 204 226 0.96 2 23 0.03 1.5 9.1 0.6 1 22 615 636 615 636 0.95 3 23 5.1 2.6e+02 2.1 0.4 1 22 678 699 678 701 0.82 4 23 0.0024 0.12 12.6 4.0 2 22 711 731 710 731 0.93 5 23 0.77 40 4.7 0.0 3 23 740 761 738 761 0.89 6 23 0.012 0.61 10.4 0.2 3 23 782 803 780 803 0.96 7 23 0.0087 0.45 10.8 3.4 1 23 809 832 809 832 0.95 8 23 0.085 4.4 7.7 0.0 1 23 858 881 858 881 0.90 9 23 0.0037 0.19 12.0 3.5 1 23 886 908 886 908 0.97 10 23 0.0059 0.3 11.4 0.2 1 23 914 937 914 937 0.95 11 23 0.0016 0.081 13.2 1.3 1 23 950 972 950 972 0.97 12 23 0.00012 0.0062 16.7 1.8 1 23 1025 1048 1025 1048 0.97 13 23 0.0021 0.11 12.8 1.8 1 23 1108 1131 1108 1131 0.96 14 23 0.00079 0.04 14.1 1.6 2 23 1160 1182 1159 1182 0.96 15 23 0.013 0.65 10.3 0.1 2 23 1188 1210 1187 1210 0.94 16 23 0.0067 0.35 11.2 0.2 1 21 1253 1273 1253 1274 0.95 17 23 0.00029 0.015 15.5 1.0 1 23 1284 1306 1284 1306 0.93 18 23 6e-05 0.0031 17.6 0.3 2 23 1399 1421 1399 1421 0.93 19 23 9.2e-07 4.7e-05 23.3 1.4 3 23 1428 1448 1427 1448 0.98 20 23 0.012 0.6 10.4 0.4 1 23 1468 1490 1468 1491 0.95 21 23 0.082 4.2 7.8 0.0 1 23 1512 1534 1512 1534 0.97 22 23 0.019 0.96 9.8 0.6 1 23 1540 1563 1540 1563 0.95 23 23 7.4e-05 0.0038 17.4 0.4 1 23 1571 1594 1571 1594 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCCATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCATCCTCGCAGTGAAAATCAAGGATTGTGTTTCTGTTCAGataaacgAAAATGACGACCTGCCTACTAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCatgtatttaaaaacgtatGTGAAAGGACACAAAACAAACTACTGTCTCTAAAAGATGGCAGCCAACTAGAAGAGgTAAAAATAAAGAGTGAACCACTATCTGATGAGGCTTATGATGATGGAGTGGTTATTGATGGCTCATATCCTGACATTGAGaatgcCAGTTCAAACAAAGTGCAACCTGAAGGTCCCCCAATCTTGGCTTCATTGGGGCTCACGCCAAGGAGTGATAAGGGGGCGGAAAGTGAGAATAACGAAGATGAAGAGGACGAGGAAGAGATGAATGAACCGGCTCAAACATTCCCCAAGATGCCCCACATGCCCGAGGTGTCCATCACAGTGATGCGGCCCACCGGCGAGACCCTACACGCCCGGCAAGGCATCCACCAGCTCGCTTCCAAAGACTGCCTGGTCTGTGGCCGCTCCTACAGGTACTCACACAACGCCCGCCGTCATGAACTCACCGCTCACGGCTTCGATAGATATACAAACAAGACAACACCCAAGAAAACTCTCACTCACCTGCAACCCAAACTCAGACCCAACCCGTTCAACCCCAAAGCGAGGATGATGCCGAATCCTATTAATCATAAGATGcaatttatgaacaaaaatatgtCAGCAAAGAAAATACCAATGAAAGTAGTAACGCCCCAACGACCCATTCAAATAAAATCGTTGAAGGCAAATCAAAATAACTTACCTTATCCTCTTCGCATTAAAGCGCTTAAAGatttacaaataaagaaaaaagaaccCCAAATACTAAAGACTTTATTGACGTCTAAGCCTGAAGTTCTAGTATCGGAACCTGAGATTTTAAATTCTGGTCCTGAAAGTCCGGAAACTTTAATTTCTGAACCTGAAATTGCATCTTTTCAAGTTGAAGCTATTCTTTCGGAGCCAGATGCCGATGCATATGATCCAAACCCAGGCGACGAGGATGTCGATGGAGATGGTGATATGCAtaacaatcaaaatcaaaactatgACACTGTTGATATGGACTCTGAGAACGAAATTGAAATTGCCCGTCAGCAAGGTATTGAACAAGATGGTGATGAAAACGCTGATGGGGATGAAAATACGGAACAAGATGACGATAATATGGAAGGTGCTATGAGCGATAATGATAATGACAATGACAAAGATGTTATCGATGAAAATGCAGAAAGTCGGGAAAACATGGATGGGGATGACAGCACTGTTAAACCTGATACAGAGAAGGACGATGAGGAGGGTCAAGAAGATAGAGAAAATGAAGAGATGGAAATGAATAATGACCAAGACGAACAAGAGGAAGACGATGACGATGACCTTCCTATGTCATTAGCACCAGTCGTTGAAATAAATGAGGACATGCAAGCTAACTTGTTCAACAGTGAGATGCATGAAGATGATGACGATCTTGACGCATCCGCCGATCCCAACGAAACCGTTGATGAAGAAGAGCAGGTCAAGGAACTCGACCCGGACAAAACATATGTTACGAAAACCCAAAGAGATTTTATCCATAAATATCGTGACATCATTGAACAAATTAATACGAAACGCTGTCTTTGTTGTGACAGGGAACATCCGCGTAGGAAAGCGGTTATACAACACTTACAGAAAAATGGGCACAAGGTCCCGAAGCACACATGCTACAACTGTGTTGTCACATTCAGTCATATTGGTGCTCTGCTCAGCCATATGAGGTCAAATTCATGTACAAATTTGTGGAAGATAATATACAACGAAAACGGTATCACAGATGATTTGGTCATAGAAGATGAGCCTAAGGAGATCAAGGTGCAAACCAAAGACATTTTCAATGCTCGATCATATGCTTGCAAGCTTTGCCCAGCTAAGTTCCAATTGAAACAGTTTATTATGAAACACGTTTTAGATACGCATGAAGATGGACAATCTAGAATGCCACTTTGTTGTGTTCACTGCCGCGCTAGGTTCAAAGATAAAAGCTTATTGAAGAAACACATTCGCAAAGGTGATTGTACGGTGTATGTTGCATGTGATTTGTGTCCAGAGAAGTTCGGTAATATGCAAGACTTCAATGACCACGCCTTAGCAATTCACGCCGGTAGTTTTGATCAGTCAGATAACCAAAGTAAATGTGTTGATGGTCGGCCTACCGACTGTCCGCTGTGTGGTAAGAAAAACAGCAGCTATCCGAATTTAGTAAAACATTTGAAGATTATACACAGTGAGGAGAAGCCTCACTATTGCCAACATTGCGAATCTAAATTCGAACAAGCTACTGATCTTAACAAGCATATTTACATGGAGCATTCTGACAGAACATTAGGAATGGCAAGCAACGAGCCGGACATGTCAATTGTAAAAGAAGAAGCTGAGGAGTACCATTATTCATGTACGGAATGTAATGCCATATTTGAAACTGTCGACGCGTGGACTGATCACCAAGTGGCCGAACACAACCAAGTAGCTCACCACTGTGACCAATGCGACAAGAAGTTTTTGCGTCCGTCCGAACTCGCAGAACATAAGAACACTCACTTAAGAGTCAAGTTCTACCCATGCAGTGTGTGCCCTAATTCATACAGTACTCCTCAGAAATTGTCTGAACATGTACAGCAGTCTCACCCTGGCGTAGGTGCAGTAGCAGCAGCTGATTCAGAATTCTTCTGTGATATTTGCATCAGATCATTTAAAAGTCGCCAAGCGTATTCAAATCATATGCGTATACACGCTAAAGTACCAACAACTAACAGAAAACCAGGCCAACCGGGTGAAATTAAGGGTGGATTTGCTCCACAAATTATCGGAAAACCCATCAAACAATACCCTGTGGTACAACCAGGGTTTGTATCATTTAAACCAAACTATAATATTCCCAATGCTCCGTATTCCTGTGATATTTGCGGAAAAGGTTTCATGCACAAAAAGAATATTTGGAAGCACAAGAAAGTATTGCATGCTGACATTTTAGTTGATAGGCACGACAGCGAAGAAAATACAATGCATGCGTCAACTGAAGAAGAAGAATTCAATCCTGATGAAAACGGTGCCATTCTCTCAACGCcacaatttaatagttttaacttTACTAATTTCCCAAACAATATACAGCAGTCATCCCAAGAGTCTATGCCTTATTCTTGCGAATTATGCTTTAAGCGATTCCCGTTGAAGACTAGTTTGTGGAAACATAAACGTGCTAAACATGGAATTGTTAACCCTGGCACCAGCGCCGGTAGTGATACGCCCACGCAATCGGCGAGTGGTGAgggtagtagtagtagtagatCCAGTTGCACAATATGCAGGATCACTTTTACAGATAAGAAATCATACTATCGCCACCGAAAGATTGTTCACAAGTCCACCGTTCAAATGTGTAAATTATGTGGCAAATCTCTTAACTCACCTCTGGAATTGTACGAACACTTGAAAGCAGTTCATGCCAGGGAATTGCTTGGATATAATGCTAATCAGGGGTCTAGTAAATCTCAGGATATGTCCCAAGACATGGAAGCAGAATACGAGAACGATCAGGAGGTAGACCCCAGTGTCGATTACCAAGCACGATACCCTTGCGATACTTGTGGTAAACAATTTGTAGGGTTACTGGCACTGCAGAATCACCAATGTATTAATCAGATGCCTTCGCAACCACAAACTTTTGATTGCGAGATCTGTCACAAGAGTTACACATCGATATCTGCATTAAAAAGTCATCGAGGTTGGCATCTAAGATCACCTGACGGAAAGGCGGCTGCAAATAATTCCGGACTCTGGATGCCCCAGCACAAAGTAACCAGCAAGATAAGCAAACACGAGGTCGTGGACCCTGTACAACTTGCTAAAGTCACCCATACCCCTTCTGCCAGCCCAGCGCCTTCCGCTTCCGTAGCGAAACGGAGATTACCGCCGGAAGTTGAAGTGACAGTCGTCAACCCCAACAAAAAACTGCGATCTGATGATTCAGTAGAGTTGGAACAAAGTACTGGCACCCTCGAAGATAGATACTGTAATATTTGTGATAAAGAATTTACCAAACGGGCTGCATATCAGCGGCACATGGACGAGGTACATCAACCAAACTCAGTTTTTTGTCCGGTCTGCGAAAAGAGTTTTACGAGAAAGTCGACGTTACTCATTCATATGAAGAAACATTATGAGACTGGCGAAGGCGGTAGTTCCTCCGTGACTGGTCAAGGTGATGATGAGATGTACAATTGTGATTTGTGCGGAGCTCAGTACGACAACGAGCAGGCGCTGAGAGCCCACCGCGTGCGGCATCACGGCGAGGAGTCCGCGGAGGAGAGCGACGACGGCAGCgtggccgcgccgccgcccggcgAGTTCACCTGCGGACAGTGCGGCGACGGCGTGGCCACGCCCAGGGACCTCATCGCGCACCGCACCATGCACGCGACGCCCACCAAGTTCTTCTGCAACATATGCAAGGTGTACTTCGCCCGCGCGCTCGACCTCTCGTCGCACACTCGGGCGCGACACTCGGACAACGAAAAGGTATTCTTCCCTTGTGCCATGTGCGACAAATTTTACATGAACAAGAAGAGTTTACAACGGCATATCGAGATGGCTCATTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPILAVKIKDCVSVQINENDDLPTNVCRKCMDNVNNWHVFKNVCERTQNKLLSLKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYPDIENASSNKVQPEGPPILASLGLTPRSDKGAESENNEDEEDEEEMNEPAQTFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKDCLVCGRSYRYSHNARRHELTAHGFDRYTNKTTPKKTLTHLQPKLRPNPFNPKARMMPNPINHKMQFMNKNMSAKKIPMKVVTPQRPIQIKSLKANQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILSEPDADAYDPNPGDEDVDGDGDMHNNQNQNYDTVDMDSENEIEIARQQGIEQDGDENADGDENTEQDDDNMEGAMSDNDNDNDKDVIDENAESRENMDGDDSTVKPDTEKDDEEGQEDRENEEMEMNNDQDEQEEDDDDDLPMSLAPVVEINEDMQANLFNSEMHEDDDDLDASADPNETVDEEEQVKELDPDKTYVTKTQRDFIHKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTNLWKIIYNENGITDDLVIEDEPKEIKVQTKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRMPLCCVHCRARFKDKSLLKKHIRKGDCTVYVACDLCPEKFGNMQDFNDHALAIHAGSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHSEEKPHYCQHCESKFEQATDLNKHIYMEHSDRTLGMASNEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGVGAVAAADSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGQPGEIKGGFAPQIIGKPIKQYPVVQPGFVSFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMHASTEEEEFNPDENGAILSTPQFNSFNFTNFPNNIQQSSQESMPYSCELCFKRFPLKTSLWKHKRAKHGIVNPGTSAGSDTPTQSASGEGSSSSRSSCTICRITFTDKKSYYRHRKIVHKSTVQMCKLCGKSLNSPLELYEHLKAVHARELLGYNANQGSSKSQDMSQDMEAEYENDQEVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQMPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVVDPVQLAKVTHTPSASPAPSASVAKRRLPPEVEVTVVNPNKKLRSDDSVELEQSTGTLEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLLIHMKKHYETGEGGSSSVTGQGDDEMYNCDLCGAQYDNEQALRAHRVRHHGEESAEESDDGSVAAPPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDKFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852035;
- 90% Identity
- -
- 80% Identity
- -