Mlor013987.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056791.1:7254309-7263905[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0078 0.68 11.3 1.6 3 23 99 120 98 120 0.96 2 23 0.17 15 7.1 0.3 1 22 506 527 506 527 0.95 3 23 7.7 6.7e+02 1.9 0.3 1 20 569 588 569 592 0.80 4 23 0.0029 0.25 12.7 4.0 2 22 602 622 601 622 0.93 5 23 0.076 6.7 8.2 0.1 2 23 630 652 629 652 0.89 6 23 0.014 1.3 10.5 0.2 3 23 673 694 671 694 0.96 7 23 0.00083 0.073 14.4 3.4 1 23 700 723 700 723 0.95 8 23 0.1 9 7.8 0.0 1 23 749 772 749 772 0.90 9 23 0.015 1.3 10.4 3.4 1 23 777 799 777 799 0.97 10 23 0.0071 0.62 11.5 0.2 1 23 805 828 805 828 0.95 11 23 0.0033 0.29 12.5 0.8 1 23 841 863 841 863 0.97 12 23 0.00015 0.013 16.8 1.8 1 23 913 936 913 936 0.97 13 23 0.00093 0.082 14.3 1.1 1 23 995 1018 995 1018 0.96 14 23 0.0019 0.17 13.2 2.1 2 23 1046 1068 1045 1068 0.95 15 23 0.032 2.8 9.4 0.1 2 23 1074 1096 1073 1096 0.94 16 23 0.0081 0.71 11.3 0.2 1 21 1140 1160 1140 1161 0.95 17 23 0.00034 0.03 15.6 1.0 1 23 1171 1193 1171 1193 0.93 18 23 9.2e-05 0.008 17.4 0.3 2 23 1286 1308 1286 1308 0.93 19 23 3.2e-07 2.8e-05 25.1 1.4 3 23 1315 1335 1314 1335 0.98 20 23 0.2 18 6.9 2.1 1 23 1353 1375 1353 1376 0.95 21 23 0.15 13 7.3 0.0 1 23 1399 1421 1399 1421 0.97 22 23 0.024 2.1 9.8 0.4 1 23 1427 1450 1427 1450 0.95 23 23 0.00022 0.019 16.2 0.4 1 23 1458 1481 1458 1481 0.96
Sequence Information
- Coding Sequence
- atgaATTCAGCTAAAAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTTGAAAATCAAGGATTGTGTGTCTGTAGAGGGTGCAGAGAGCGAAAACAATGAAGAAGACGAGGAAGAAGTGAGTGAACCCGCACAAAAATTCCCGAAAATGCCTCATATGCCTGAAGTGTCCATCACGGTCATGAGGCCAACTGGAGAGACCCTGCACGCGCGCCAAGGCATACATCAACTAGCCTCCAAACTGTGCCTCGTCTGTGGCCGCTCCTACAGGTATTCTCACAACGCACGCAGACATGAACTTACCTCTCACGGCTTCGACAGATATACAAACAAAGTCACTCCTAAAAAAACACTCAATCATCTACAACCCAAACTTAGACCGAACCCATTCAACCCCAAAGCACGGATGATGCCGAATCCTATTAGTCATAAGATGCAGTTCATGAATAAGAACATGCCAACTAAAATAATGCCTATGAACAAAGTTATAATGCCACAGAAACCCATTCCAATAAAAACAACGACgactaaaacacaaaataatttgcCTTATCCTCTTCGTATTAAAGCACTTAAAGATTTACAAATCAAGAAAAAGGAGCCTCAGATTCTAAAGACTTTATTAACCTCTAAACCTGAAGTTCTGGTTTCAGAACCAGAAATTCTAAATTCTGGTCCTGAAAGTCCAGAAACGTTGATATCTGAACCTGAAATTGCGTCTTTCCAAGTCGAAGCTATTCTTACGGAACCCGACGCAGACGCATATGATGATCCTGAACAAGGTGACGAAGAAGTTGATGAAGAAATGCAGaacaatcaaagtcaaaattatgACACAGTTGATATGGATTCTGAGAACGAAATAGAGATTGCTCGTCAGCAAGGCATTGAACACGAAGGTGAGGAAAATGCTGATGGGGAAGAGAACATTgaccatgatgatgataacaataTGGAAGGCGCTCAGAGTGACAACGAGAAAGATGGCAATGACGATACTGTTGAAAGTCAAGAGAATATGGATGAAGATAGTGTTGAAGTTAAGCCTGAAGATCAAATAAAGGACGACGAGGAACAGGAACAAGAGGAGGGAGAGCATGAAGAAGTAGAGATGAATCATAATGAGAATGAAGAGGACGACGATGATGAGCTTCCAATAGCGCCAGTCGTCGAGATCAATGAGGGACTGCAAGTTAACTCGTTTAACAGCGAAGCCAATGAAGAAGACGAGGAACTCGACGAGACTGTCGATCCTAATGACACCATTGAAGATGAAGAGCAGCAGGTTAAGGAATTAGACCCTGACAAAACATATGTTACAAAAACCCAAAGAGACTTCATCCAAAAATATCGCGACATCATTCAACAAATCAACACGAAACGCTGTTTGTGTTGTGACCGCGAACATCCGCGCAGAAAAGCTGTAATACAACACTTGCAGAAGAACGGACACAAAGTACCAAAGCACACTTGTTATAACTGTGTCATCACTTTCGGACATATTGGCGCGCTACTCAGCCACATGAGGTCAAATTCTTGCACTAATTTGTGGAAGattatttataatgaaaatgGCATTACCGACGACTTGGTACTCGAAGATGAACCTAAAGAAGTCAAGGTCGCTTACAAAGATATTTTCAATGCCAGATCATATGCTTGCAAACTCTGTCCTGCTAAATTCCAACTGAAACAGTTTATTATGAAGCATGTAGCGGACACTCACGAAGATGGACAGTCTAGGGTACCGCTCTGTTGTGTCCATTGCCGTGCTAGGTTCAAAGACAAGAGTTTACTTAAGAAACATATTCGTAAAGGTGATTGTATGGTTTATATATCATGTGATTTGTGCTCTGAAACGTTCAGGAATATGCAAGACTTTAACGACCATGCGTTAGCTGTCCACGCTGGCAGTCTCGATCAGTCAGATAATCAGAGCAAATGTGTTGATGGTCGGCCAACAGACTGTCCTTTGTGCGGGAAGAAAAACAGCAGCTATCCGAATTTAGTGAAACATTTGAAGATTATTCACGCCGAGGAGAAACCTCATTACTGCCAACATTGCGACGCTAAATTCGAACAATCTAATGATCTGAACAAACACATTTACATGGAACATTCGGACAGAACGTTAGGCATGCCGCCTGCGGAGCCGGATATGTCCATAGTGAAAGAAGAAGCTGAGGAGTATCATTACTCATGCACAGAATGTAATGCTATTTTCGAAACTGTTGATGCGTGGACTGATCACCAAGTCGCAGAACATAATCAAGTGGCCCACCACTGCGACCAGTGTGAGAAAAAATTCCTGCGCCCTTCAGAGCTGGCAGAGCATAAGAACACTCACTTAAGGGTTAAGTTCTATCCTTGCAGTGTATGCCCTAACTCTTACAGCACTCCACAAAAACTGTCTGAGCATGTGCAACAGACACATGCAGGTATCGGCGCAATCGCGGCAGCTGAGTCTGAGTTCTTCTGCGACATCTGCATAAGAGCGTTCAAGAGTCGCCAAGCTTACTCAAATCATATGCGTATTCACGCTAAAGTACCCACAACTAACAGGAAGCCAACTACAGCCAAAGATGGATTCGCGCCTCAAATTATCGGGAAACCAATCAAACAATATCCTATGGTTCAACCTGGTTTCGTATCATTTAAACCTAATTACAACATCCCTAACGCTCCGTATTCCTGTGACATTTGTGGTAAAGGGTTCATGCACAAGAAAAATATATGGAAACATAAGAAAGTGCTACATGCCGATATTTTAGTCGATAGACATGATAGTGAAGAGAACACTATGCAAGCATCCACCGAAGAGGATGAATTCAATCCTGATGAGAATGGTTCTATCCTCTCAACACCACAATTTAATAGTTTCAACTTTACGAACTTCCCGAATAATACTCAACAAACTCCACCAGAAATGCCTTATGAATGTGATTTATGTAGCAAACGGTTCCCCCTTAGGACCAGTTTGTGGAAACATAAACGCGCTAAACACGGAATTGTAAACCCTAGCACTAGTGGTAGCGTCGATACGACATCCGCGCCTTCCGCTAGCGGAGAAGGCAGCAGCAGATCCAGTTGCACTATATGTAGAATCACATTTTCAGACAAGAAATCTTATTATCGCCATCGAAAGAATGTCCACAAATCTACCGTTCAAATGTGCAAAATATGTGGCAAACCTTTAAGTTCAACTTTAGAACTATATGAGCATTTGAAAGCCGCTCATGCGAGGGAATTACTGGGTTTTAACAGTAACCAAGGCTCCAGTAAATCACAAGATGTCACACAAGACATTGAACCTGATTATGAAAATGATCAGGAGGCTGCAGACCCTAGTGTCGATTACCAGGCCCGCTACCCATGCGATACTTGTGGCAAACAATTTGTTGGTCTGTTAGCATTGCAGAACCACCAGTGCATCAACCAGGTGCCATCACAGCCACAGACGTTTGACTGTGAGATTTGCCACAAGAGCTATACTTCAATATCTGCATTAAAAAGCCATCGAGGATGGCATTTACGTTCACCCGATGGAAAGGCAGCCGCCAATAATTCAGGCCTTTGGATGCCTCAGCACAAAGTTACTAGCAAGATAAGTAAACACGAAGTCATCGACCCGTCTCAACTTGCAAAGGTCACACATGCTCCTACTCCTCCCCCTGTCAGTGCGTCCGTAGCGAAAAGACGATTACCGCCAGAGGTAGAAGTGACGGTCGTAAATCCAAACAAGAAATTGCGTTCTGACGACTCGGTCGacatggatttgcaaaattctgGTACAATCGAGGATAGGTACTGTACGATATGCGACAAAGAGTTTACGAAACGAGCGGCGTACCAGCGCCACATGGACGAAGTGCATCAACCGAACTCTGTGTTTTGTCCGGTCTGTGATAAGAGTTTTACAAGGAAGTCCACATTACTAATTCACATGAAGAAACACTACGAGAGCGGTGAGGGTAGCTCCTCAGCCACAGGCCAAGGGGACGATGATTTCTCGTGTGATTTGTGTGGCGCTCAGTGTGACAATGACCAGGCGTTGAGGACACACCGAGCGCGACACCATGGCGAAGATGAAGAGTCGGCAGAAGAGAGTGATGACGGAAATGTTCCTATAGCTCCTCCCGGCGAATTTACATGTGCGCAATGTGGCGATGGAGTTGCTACTCCTAGAGATCTCATTGCCCACCGCACTATGCACAATACTCCCACCAAATTCTTCTGTAACATTTGTCAAGTGTACTTCGCTCGGGCGCTTGACCTGTCCTCGCATACTCGGGCGCGACACGCTGACAACGAAAAGGTATTCTTCCCGTGTGCCATGTGCGATAGGTTTTACATGAACAAGAAGAGTTTACAGCGGCACATTGAGATGGTTCACTGA
- Protein Sequence
- MNSAKRLCLSSRGELLPIFPTTSSDDSEPPVLALKIKDCVSVEGAESENNEEDEEEVSEPAQKFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKLCLVCGRSYRYSHNARRHELTSHGFDRYTNKVTPKKTLNHLQPKLRPNPFNPKARMMPNPISHKMQFMNKNMPTKIMPMNKVIMPQKPIPIKTTTTKTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILTEPDADAYDDPEQGDEEVDEEMQNNQSQNYDTVDMDSENEIEIARQQGIEHEGEENADGEENIDHDDDNNMEGAQSDNEKDGNDDTVESQENMDEDSVEVKPEDQIKDDEEQEQEEGEHEEVEMNHNENEEDDDDELPIAPVVEINEGLQVNSFNSEANEEDEELDETVDPNDTIEDEEQQVKELDPDKTYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEDEPKEVKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVADTHEDGQSRVPLCCVHCRARFKDKSLLKKHIRKGDCMVYISCDLCSETFRNMQDFNDHALAVHAGSLDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHAEEKPHYCQHCDAKFEQSNDLNKHIYMEHSDRTLGMPPAEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQTHAGIGAIAAAESEFFCDICIRAFKSRQAYSNHMRIHAKVPTTNRKPTTAKDGFAPQIIGKPIKQYPMVQPGFVSFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMQASTEEDEFNPDENGSILSTPQFNSFNFTNFPNNTQQTPPEMPYECDLCSKRFPLRTSLWKHKRAKHGIVNPSTSGSVDTTSAPSASGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGFNSNQGSSKSQDVTQDIEPDYENDQEAADPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPSQLAKVTHAPTPPPVSASVAKRRLPPEVEVTVVNPNKKLRSDDSVDMDLQNSGTIEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDFSCDLCGAQCDNDQALRTHRARHHGEDEESAEESDDGNVPIAPPGEFTCAQCGDGVATPRDLIAHRTMHNTPTKFFCNICQVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852035;
- 90% Identity
- -
- 80% Identity
- -