Hmis016986.1
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000020.1:230449-232797[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.4e-06 0.00021 22.3 3.9 1 23 7 30 7 30 0.95 2 20 0.001 0.089 14.1 0.4 2 23 36 58 35 58 0.95 3 20 6.3e-06 0.00056 21.0 0.3 2 23 67 89 67 89 0.97 4 20 4.8e-06 0.00043 21.4 1.7 2 23 98 120 97 120 0.95 5 20 1.4e-05 0.0013 19.9 2.4 2 23 128 150 128 150 0.96 6 20 1.2e-06 0.0001 23.3 0.7 2 23 159 181 158 181 0.95 7 20 3.9e-07 3.4e-05 24.8 1.5 1 23 187 209 187 209 0.99 8 20 0.013 1.1 10.6 2.9 1 23 217 240 217 240 0.91 9 20 0.0049 0.43 11.9 0.6 1 23 259 282 259 282 0.98 10 20 0.0058 0.51 11.7 1.8 1 23 312 334 312 335 0.95 11 20 0.41 37 5.8 0.6 2 21 343 362 342 363 0.93 12 20 0.027 2.3 9.6 4.0 1 23 371 394 371 394 0.95 13 20 0.013 1.2 10.5 5.7 1 23 418 441 418 441 0.96 14 20 1.3e-05 0.0011 20.1 0.6 2 23 448 470 447 470 0.96 15 20 3.2e-05 0.0028 18.8 2.2 2 23 477 499 476 499 0.94 16 20 0.0075 0.66 11.3 2.2 1 23 505 528 505 528 0.97 17 20 0.08 7.1 8.1 4.4 2 23 536 558 536 558 0.95 18 20 0.0023 0.2 12.9 0.4 1 23 565 588 565 588 0.96 19 20 0.0086 0.76 11.1 1.9 1 23 595 618 595 618 0.90 20 20 0.023 2 9.8 2.2 5 23 634 653 631 653 0.89
Sequence Information
- Coding Sequence
- atgtCACAAAACACAGACTACGTCTGCGATTACTGCAGTCGATCGTTCACGAGAAAATACAACCTGCAAACGCACATCGAAAACTGCCACCTAAACTCGTCGTGTTATTGTGAAATATGCAATCAGAGATTCGGCAGTCCGGCGGGGTTGCAGCTTCATTTATCCCGCGGACACAACCGCTTCGGGCAAGGTCTACCCGAATGTGACATATGCGGCAGAATATTCACAAGAAAACAGAACATCACCTCGCACATGATTACCGTACACTTGCAAGGGAGCCGGCAGGATATCCGCTGCAATTTGTGCAACAAGACCTTCACGACTGACCGCAATTTGAAACGACATATTAACCAATTACACAACCCCCACGTTGAATATGCAACGTGCAACGATTGCCATAAAGTCTTTAAAGGAAAACACTCTTTGATAGCTCACATACAATCCGCTCATGGGCCTGTTTACAAGGGCGTTATCAAATGCAATTTGTGCGGTAAAGTGTATACTAATAATAGAAACTTGAAGAGACACGTTGAGATGAACCATGGGGAACGGGGGGAGTTCAAGTGTGATATATGCCCTAAAGTGTATACATCCAATCAGAGCTTGCGACGTCACACGCGAAGTCATACAACTCACAACTTCTCTCAGTTCAACTGTGAGTTTTGCACGAAAACTTTCATAGGTAAAGAGAATCTCGACAATCATGTGTCGTTTTGTCATAGGCGGGAAAATTCTAGCTCGAACGATTATGACGTAGCTGGTTTGAAAAAGTTGTTTGAATGCGAATTTTGTAATCGCGGCTATGAATACGAGGCCAGATTGAGGTATCACATAAAAACTGAGCACTCGTTTCAGGATTTTTATGACTATTGCAAGAAATCCTTGATAAAAACATGGTCATCGGAGAAATCGAGAAAGCAGAAGTTTCTTTACTACAATTGTGAGTTTTGTATCAACGCGTTTTCAACTGTTTACGATCTGAAAGATCACATGAGGTCACATCATGATAAGGAATATAATCTATCGACGTGCAATGTGTGTTTCAGCAAGTTTTTTAGTAAAGAAACGTTAGCGGATCATAAGAAAATATGCATCCCACCAGACAACGCACACTCTTGCAGTCACTGCGACAAATTGTTCACTGATATATCAAGTCTAATTTTTCACACAAGAATCTTCCACCCTCAAGCACAAGTTGCCGACTCCAATATATCATCAAGTTACATAGAGGATTCTTTGGAAATGGCGTCCTTCAAATGCTTGCACTGTGACAGAGTGTATTACAGCGACAGATCATTAAAACACCATGTCAAATTGAAACATACCACCGAAGAAGCCGTCGAGTGTCAATATTGTGGCAAGATCTGCAGCAATAAGTACTATTTAGCATCCCATATAAAAATCGTCCATAATAACGATTCTTGGTCGAAATGCGATTATTGTGACAAGCAATTTAAATCCAAAAGGAATATACGACGCCACATCGAGTACACGCATTTGGGGATGCAAAGATACAAGTGTATTGAATGCGAGACGCTTTTTAAAGAGAAGAGGAGTTTGCGTAAGCACGTGAGAACTAAACACCCGAATTCTACAGCATTTCCGCAGTGTCACATTTGTGAAAAGCGCTTCGAATCGGCAAAATCTTGTAAAATTCATCTAAAACTACTCCATTCTTTCAATATGAATACCCATCCTTGTGATCTGTGCTCTGTGTCCTTTACGTCAATCGAAGCGCTGAACATACACCTAACAACCAAGCATTTAGCCGAGGACGAAATCTATAAATGCGAAGAATGCAACATGGTGTTTAAAGGCCAAGAAAGTTTTGACCATCACAACGAGAACTATCACGTTAATATACCGACATTGAAGCAGAAGTCGCTCCCTCGATGCATTATATGCATAAAAGATTTCAGTACGAGAAAAACTTTGAAACGACACATTAAGAAGTTCCACAGCGAATTCAATGTCGACGAATTGGCGATATACGGCTCGAGAAAGCGTGTCTTTAACGTGGAGTGCGTTGAATGCGTCAAGAATTTTAATGACGATTTCTATTTTACCGTTTACCAGAAGTTAAAAAACATTCGCGACTCGGTTATTTTTAAATGCGAAACGTGTAAGAGTTCATATTCTTGCTTGGAGTTCGCTATACAGAGATACAAGCAGAGCTTTGACATATCTAAAAGTAAGCTGTACCTGAGCGAGCTCTGTACGGCGGAGATGAGTGACGCTGAGGTGGAAAATGAAATAATGGAGCCAGAGAGCACGACAAGCGACATTAAACTAGAATCTCAAGAGATTATATCGGAATATTACATCAAAATGGAGCCTATGTCGCCGTGA
- Protein Sequence
- MSQNTDYVCDYCSRSFTRKYNLQTHIENCHLNSSCYCEICNQRFGSPAGLQLHLSRGHNRFGQGLPECDICGRIFTRKQNITSHMITVHLQGSRQDIRCNLCNKTFTTDRNLKRHINQLHNPHVEYATCNDCHKVFKGKHSLIAHIQSAHGPVYKGVIKCNLCGKVYTNNRNLKRHVEMNHGERGEFKCDICPKVYTSNQSLRRHTRSHTTHNFSQFNCEFCTKTFIGKENLDNHVSFCHRRENSSSNDYDVAGLKKLFECEFCNRGYEYEARLRYHIKTEHSFQDFYDYCKKSLIKTWSSEKSRKQKFLYYNCEFCINAFSTVYDLKDHMRSHHDKEYNLSTCNVCFSKFFSKETLADHKKICIPPDNAHSCSHCDKLFTDISSLIFHTRIFHPQAQVADSNISSSYIEDSLEMASFKCLHCDRVYYSDRSLKHHVKLKHTTEEAVECQYCGKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICEKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSIEALNIHLTTKHLAEDEIYKCEECNMVFKGQESFDHHNENYHVNIPTLKQKSLPRCIICIKDFSTRKTLKRHIKKFHSEFNVDELAIYGSRKRVFNVECVECVKNFNDDFYFTVYQKLKNIRDSVIFKCETCKSSYSCLEFAIQRYKQSFDISKSKLYLSELCTAEMSDAEVENEIMEPESTTSDIKLESQEIISEYYIKMEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00986470; iTF_00985357; iTF_00695884; iTF_01508244; iTF_01506535; iTF_01078387; iTF_01080071; iTF_01080078; iTF_01078394; iTF_00796698; iTF_00843708; iTF_00843715; iTF_01079231; iTF_01080900; iTF_01079224;
- 90% Identity
- iTF_00843708; iTF_00843715;
- 80% Identity
- -