Vtam019408.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- -
- Assembly
- GCA_037043105.1
- Location
- CM073306.1:3341183-3343540[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.3e-06 0.00017 22.3 3.9 1 23 8 31 8 31 0.95 2 20 0.00096 0.071 14.0 0.4 2 23 37 59 36 59 0.95 3 20 6e-06 0.00044 21.0 0.3 2 23 68 90 68 90 0.97 4 20 6.5e-05 0.0048 17.7 3.8 2 23 99 121 98 121 0.94 5 20 5.3e-05 0.0039 18.0 2.6 2 23 129 151 129 151 0.96 6 20 1.5e-06 0.00011 22.8 1.1 2 23 159 181 158 181 0.95 7 20 4.9e-07 3.6e-05 24.4 0.9 1 23 187 209 187 209 0.99 8 20 0.00029 0.021 15.7 3.2 1 23 217 240 217 240 0.92 9 20 0.0011 0.081 13.9 0.9 1 23 259 282 259 282 0.98 10 20 0.0022 0.16 12.9 1.1 1 23 313 335 313 336 0.95 11 20 0.21 15 6.7 1.1 2 21 344 363 343 364 0.93 12 20 0.02 1.4 9.9 2.0 2 23 373 395 373 395 0.95 13 20 0.048 3.5 8.7 5.5 1 23 418 441 418 441 0.96 14 20 0.00028 0.02 15.8 0.6 2 23 448 470 447 470 0.96 15 20 8.5e-05 0.0062 17.4 2.2 2 23 477 499 476 499 0.95 16 20 0.0071 0.52 11.3 2.2 1 23 505 528 505 528 0.97 17 20 0.085 6.2 7.9 5.0 2 23 536 558 536 558 0.95 18 20 0.0017 0.12 13.3 0.3 1 23 565 588 565 588 0.96 19 20 0.057 4.2 8.5 1.8 1 22 595 616 595 618 0.86 20 20 0.017 1.2 10.2 2.7 3 23 632 653 631 653 0.91
Sequence Information
- Coding Sequence
- ATGTCACAAAATCACTCGGACTATGTCTGTGATTACTGCAGCCGATCGTTCACTAGAAAATACAATCTTCAAACTCATATAGAAAACTGCCACATAAATTCGTCATGCTACTGCGAAATCTGCAATCAAAGGTTCGGCAGCCCTGCTGGCCTGCAGCTCCACCTGTCAAGAGGTCATAACAGATTCGGCCAAGGCTTGCCGGAATGCGACATATGCGGGAGGATCTTCACGAGAAAGCAAAATATCACGTCGCATATGATAACAGTGCACCTCCAAGGCGGCAGACCGGATATCCGTTGCAAATTGTGCAACAAGACATTCACGACCGATCGTAATTTGAAAAGACACGTGAACCACTTACATAACCCGAACATTGAATATCCTACTTGCGACGAGTGCCATAAAGTGTTCAAAGGTAAACACTCGTTGATAAGCCATATACAGTCCGCGCATAATTCAATCTTTAGATTAACAAAATGCAATCTGTGCGGTAAGGTGTACACGAATAATCGAAATTTGAAACGGCATGTTGAAATGAATCATGGGGAAAGGGGTGAATTTAAGTGCGATATATGCCCAAAGGTGTACACATCTAACCAGAGCTTGAAGCGACACGCCCGTAGCCACACTACGTACAATTATTCTCAATTTAACTGCGAGTATTGTTCGAAAACATTCATTGGCAAAGAGAATCTTAAAAACCATGTGTTATTCTGCCATAGACAAGAAAATTCAAGTTCAAATGATTACGATGCGGCCGGGTCTAATCGCGTCTATGAATGCGAATTTTGTAATAAAGGCTATGAATACGAGTCAAGATTACGTTACCATATTAAATCTGAACATTCATTCCAGAACTTCTACAGTTATTGCAAGAAATCTCTCTTAAAAGCGACTTGGAATTCAGAGAAGCAACGCAAACAGAATCTAATGTTTTACAATTGTGAATATTGTATTAACGCGTTCGCGACCGTTTACGATTTAAAAGATCACATGCGATCTCACCATGACAGGGAATACAATCTGTCCACTTGTAATGTCTGCTTCAGCAAGTTTTTCAGCAAGGAAACGTTAACGGATCATAAGAAAATCTGTTTTCCACCTGATAACGTAAACTCATGCAGTCATTGCGACAAATTGTTTACGGATATATCGAGTTTAATTTTTCACACGAGAATCTTCCATCCACAAGCTCAAATCGCCGATTCGAACATATCTTCAACCAACATGGAGGATTCGCTGGAAGCTTCCTTCAGATGTCTCCACTGTGATCGCATATATTATAGCGATAGGTCTTTAAAACATCACGTTAAATTGAAACATACCACCGAGGAGGCCGTTGAATGTCAATCTTGTGgaaaaatatgcaataataaatattatttggcgTCTCACATAAAAATCGTTCATAATAACGACTCTTGGTCGAAATGCGACTATTGTGACAAACAGTTTAAATCGAAGAGGAGTATACGACGCCATATTGAGAACACCCATTTAGGCATGCAGAGGTATAAGTGCATTGAATGCGAGACGCTGTTTAAAGAGAAGAGAAGCTTAAGGAAGCATGTTAGAACGAAGCATCCCAATTCGACGGCGTTTCCTCAATGCCATATTTGCCAAAAACGCTTCGAATCGGCGAAATCCTGTAAGATTCACCTGAAACTGTTGCATTCTTTCAATATGAACACGCACCCCTGCGACCTCTGTTCGGTTTCGTTCACGTCGATCGAAGCTTTGAATATACATTTATCGACGAAACATTTGGCTGAGGACGAGATTTACAAATGCGAAGAGTGCAACATAGTTTTCAAAGGTCAGGAAAGATTCGACCATCACAATGAGAACTACCATACGAATGTGCCGAATTTGAAGCAGAAACCGCTCCCTCGTTGTATAATATGCATGAAAGATTTCAGTACGCGCAAAACTCTGAAGAGGCACATAAAGAAGTTTCACTGCGAATTCAATGTTGACGAATTAGCTACATATGGTTCTAGGAAGCGGAGTTTTAATGTCGACTGTGGCGAATGTCTGAAAAACTTCAACGACGAATTTTACTTCggtatttatcaaaaattaaaacatcttagGGATTccgtaatatttaaatgtgaatCGTGTGTTACTTCGTATTCAAGTTTAGAATACGCGATACAGAGATACAAGCAAACGTTCGATGTTTCCAAGACTAAGTTGTATTTGAGCGAACTCTGTACGACTGAAATGAGCGATGTCGAAGAATTCGAGTCGAACGAAATAATGGAACCGGAAAGTACGACGTGTGACATCAAAATCGAACCCCAAGATGAAATGGAATCCGAGTGTGTCATTAAAATAGAAACTGCGTCGCcataa
- Protein Sequence
- MSQNHSDYVCDYCSRSFTRKYNLQTHIENCHINSSCYCEICNQRFGSPAGLQLHLSRGHNRFGQGLPECDICGRIFTRKQNITSHMITVHLQGGRPDIRCKLCNKTFTTDRNLKRHVNHLHNPNIEYPTCDECHKVFKGKHSLISHIQSAHNSIFRLTKCNLCGKVYTNNRNLKRHVEMNHGERGEFKCDICPKVYTSNQSLKRHARSHTTYNYSQFNCEYCSKTFIGKENLKNHVLFCHRQENSSSNDYDAAGSNRVYECEFCNKGYEYESRLRYHIKSEHSFQNFYSYCKKSLLKATWNSEKQRKQNLMFYNCEYCINAFATVYDLKDHMRSHHDREYNLSTCNVCFSKFFSKETLTDHKKICFPPDNVNSCSHCDKLFTDISSLIFHTRIFHPQAQIADSNISSTNMEDSLEASFRCLHCDRIYYSDRSLKHHVKLKHTTEEAVECQSCGKICNNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRSIRRHIENTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICQKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSIEALNIHLSTKHLAEDEIYKCEECNIVFKGQERFDHHNENYHTNVPNLKQKPLPRCIICMKDFSTRKTLKRHIKKFHCEFNVDELATYGSRKRSFNVDCGECLKNFNDEFYFGIYQKLKHLRDSVIFKCESCVTSYSSLEYAIQRYKQTFDVSKTKLYLSELCTTEMSDVEEFESNEIMEPESTTCDIKIEPQDEMESECVIKIETASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824942;
- 90% Identity
- iTF_01079231;
- 80% Identity
- -