Npol005892.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992271.1:1836049-1838403[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00083 1.3 9.7 1.1 15 43 6 31 2 32 0.89 2 19 1.9 3e+03 -1.1 0.5 17 41 36 57 33 60 0.60 3 19 0.00048 0.73 10.4 0.1 18 43 68 90 65 92 0.86 4 19 8.4e-05 0.13 12.8 1.3 15 43 96 121 94 122 0.90 5 19 0.00089 1.4 9.5 1.0 18 44 129 152 127 152 0.94 6 19 3.6e-05 0.054 14.0 2.5 16 41 158 180 154 183 0.86 7 19 0.033 50 4.5 1.5 3 38 174 206 173 212 0.76 8 19 0.23 3.5e+02 1.8 0.5 18 29 219 230 213 249 0.81 9 19 0.0012 1.9 9.1 0.1 16 44 258 283 251 283 0.90 10 19 0.0029 4.3 7.9 0.1 12 43 307 335 298 336 0.89 11 19 0.067 1e+02 3.6 0.1 11 43 367 394 364 395 0.76 12 19 0.035 53 4.5 3.4 14 43 414 440 409 441 0.84 13 19 0.12 1.9e+02 2.7 7.8 4 38 433 464 430 470 0.76 14 19 0.0021 3.2 8.4 2.3 16 43 474 498 461 499 0.79 15 19 0.045 68 4.1 0.8 17 44 504 528 500 528 0.85 16 19 1.4 2.1e+03 -0.7 0.7 18 28 535 545 531 558 0.82 17 19 6.1 9.3e+03 -2.7 0.1 32 43 576 587 566 588 0.71 18 19 7.8e-05 0.12 12.9 1.2 18 43 630 652 619 653 0.91 19 19 3.7 5.6e+03 -2.0 0.2 11 27 691 712 686 713 0.68
Sequence Information
- Coding Sequence
- ATGTCACAGAGCAACACAGACTATGTCTGCGATTACTGCGGTCGTTCATTCACTAGAAAATACAATCTTCAAACTCACATCGAAAACTGTCACCTCAATTCGTCGTGCTACTGTGAAATCTGCAATCAGAGATTTGGAAGCCCCGGTGGACTGCAGCTCCACTTATCTAGAGGTCATAACAGGTTCGGCCAGGGTTTGCCGGAATGCGATATATGTGGGAGAATATTCACGAGGAAGCAAAATATTACTTCGCATATGATAACAGTACATCTGCAAGGGGGCAAACAGGACATCCGATGCAAATTATGCAACAAGACATTCACGACTGATCGTAATTTGAAAAGGCATGTGAATCAATTACACAACCCGGATATCGAATACCCCACTTGCGATAACTGTCATAAAGTATTCAAGGGAAAACATTCGCTGATAGCCCACATACAGTCCGTGCATAGTCCTGTCTTTAAAGGATTGATTAAATGTAACATATGTGGCAAAGTGTACACGAATAATCGAAATCTGAAACGACACGTAGAGATGATTCATGGTGAAAAGGGTGAGTTTAAATGCGACATATGCCCTAAGGTGTACACATCCAACCAGAGCTTACGACGCCACGCACGAACCCATACGAATTACAATTATTCACAATTCAACTGTGAGTATTGTTCGAAGACATTCATTGGCAAGGACAGTCTTGGTAATCACGTATTGTTCTGTCATAGACAAGAAAATTCAAGCTCCAATGAATACGAGGCGGGGTCTAGTCGTATCTATGAATGTGAATTTTGTAATAATGGCTATGAATACGAGTCAAAACTAAGGTATCATATAAAGTCTGAGCATTCGTTCCAAGAGTTCTATAGCTATTGCAAGAAAATGCTCTTAAAAGCGACTTGGAGCTCAGAGAAACCAAGGAGACGGGATCAATTTTACAACTGCGAATATTGCATAAACGCGTTTTCGACTGTTTACGATTTAAAAGATCACATGCGTTCCCATCATGATAGGGAATATAGTTTGTCCACGTGTAACGTCTGCTTCAGCAAGTTCTACAGCAGAGAAACGTTGATAGATCATAAGAAAATCTGTTTCCCGCCCGATAATGTGAACTCTTGCAGCCATTGCGACAAATTGTTCACGGATATATCCAGTTTGATATTTCACACTAGAATTTTCCATCCTCAAGCTCAAATCGCCGATTCGAACATATCCTCTACTAACATGGAAGACTCGTCTGAAGCGTCCTTTAAATGTATACACTGTGATCGTATATATTACAGCGAAAGATCTCTAAAACACCACGTTAAGTTGAAACACACAACAGAACAAGCTGTTGAATGTCAAACGTGTGGAAAAATATGCAATAACAAGTACTATTTGGCGTCTCACATGAAAATCGTTCACAATAATGACGCATGGTCGAAGTGCGATTATTGTGATAAACAGTTTAAATCGAAGAGGAATATACGACGGCATATTGAATACACCCATTTAGGTATGCAGAGGTATAAGTGTATCGAATGTGAGACGCTTTTTAAGGAGAAGCGAAGTCTTAGAAAGCATGTTAGGACGAAGCATCCGAACTCAACAGCGTTTCCTCAATGCCATATATGTCAAAAGCGATTCGAATCGGCTAAATCCTGTAAAATTCATCTGAAATTACTGCATTCTTTCAATATGAATACACATCCTTGTGATCTTTGTTCGGTTTCGTTCACGTCGATAGAAGCTTTAAACATACATCTGTCGACGAAACATTTGGCTGAAGACGAGATATATAAATGCGAAGAGTGCAACATGGTTTTCAAAGGTCAGGAGAAGTTTGACCACCACAATGAGAACTACCACGTCAATGTGCCGACTTCAAAGCAAAAGCCGCTTCCTCGTTGCATTATATGCATGAAAGATTTTAGTACTCGAAAAACTCTGAAACGGCACATAAAGAAGTTCCACTGTGAGTTTAATGTGGACGAACTAGCGACTTATGGATCTAGAAATCAAACTTTCAATGTTGATTGCGCGGAATGTTTAAAGAACTTCAATGATGACTTTTACTTCAGTATTTATCAAAAGCTAAAACATCTTCGTGATTCCGTAATATTTAAATGTGAATCGTGCGTCACGTCTTATTCGAGCATAGAGTACGCTATACAAAGATATAAGCAGACTTTCGATGTATCAAAGAGTAAATTGTATTTGAGCGAGCTATGTACGACTGAAATGAGCGACGCTGATGACTTTGAGTCGAACGAAATAATGGAACCAGAGAGTACAACGAGTGACATCAAAATAGAACCCCAAGATGAAATTGATTCCGAATGTGTCATTAAATTGGAACCTATGACGCCATAA
- Protein Sequence
- MSQSNTDYVCDYCGRSFTRKYNLQTHIENCHLNSSCYCEICNQRFGSPGGLQLHLSRGHNRFGQGLPECDICGRIFTRKQNITSHMITVHLQGGKQDIRCKLCNKTFTTDRNLKRHVNQLHNPDIEYPTCDNCHKVFKGKHSLIAHIQSVHSPVFKGLIKCNICGKVYTNNRNLKRHVEMIHGEKGEFKCDICPKVYTSNQSLRRHARTHTNYNYSQFNCEYCSKTFIGKDSLGNHVLFCHRQENSSSNEYEAGSSRIYECEFCNNGYEYESKLRYHIKSEHSFQEFYSYCKKMLLKATWSSEKPRRRDQFYNCEYCINAFSTVYDLKDHMRSHHDREYSLSTCNVCFSKFYSRETLIDHKKICFPPDNVNSCSHCDKLFTDISSLIFHTRIFHPQAQIADSNISSTNMEDSSEASFKCIHCDRIYYSERSLKHHVKLKHTTEQAVECQTCGKICNNKYYLASHMKIVHNNDAWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICQKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSIEALNIHLSTKHLAEDEIYKCEECNMVFKGQEKFDHHNENYHVNVPTSKQKPLPRCIICMKDFSTRKTLKRHIKKFHCEFNVDELATYGSRNQTFNVDCAECLKNFNDDFYFSIYQKLKHLRDSVIFKCESCVTSYSSIEYAIQRYKQTFDVSKSKLYLSELCTTEMSDADDFESNEIMEPESTTSDIKIEPQDEIDSECVIKLEPMTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824942;
- 90% Identity
- iTF_01079231;
- 80% Identity
- iTF_01080078;