Mcix017741.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992234.1:3916997-3920449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2e-06 0.00021 22.3 3.9 1 23 3 26 3 26 0.95 2 21 0.00055 0.059 14.6 0.3 2 23 32 54 31 54 0.95 3 21 1.5e-05 0.0017 19.5 0.3 2 23 63 85 63 85 0.97 4 21 4e-06 0.00042 21.4 1.7 2 23 94 116 93 116 0.95 5 21 0.0001 0.011 16.9 3.7 2 23 124 146 124 146 0.96 6 21 3e-06 0.00032 21.7 2.8 2 23 155 177 154 177 0.94 7 21 7.7e-07 8.2e-05 23.6 0.8 1 23 183 205 183 205 0.99 8 21 0.0015 0.17 13.2 2.9 1 23 213 236 213 236 0.94 9 21 2.6 2.8e+02 3.1 1.1 1 23 252 275 252 275 0.95 10 21 0.004 0.43 11.9 0.3 1 23 305 328 305 328 0.97 11 21 0.41 44 5.6 0.7 2 21 336 355 335 356 0.93 12 21 0.037 3.9 8.9 2.1 2 23 365 387 365 387 0.93 13 21 0.011 1.2 10.5 5.7 1 23 410 433 410 433 0.96 14 21 2.3e-05 0.0025 19.0 0.7 2 23 440 462 439 462 0.96 15 21 2.6e-05 0.0028 18.8 2.2 2 23 469 491 468 491 0.94 16 21 0.0061 0.66 11.3 2.2 1 23 497 520 497 520 0.97 17 21 0.073 7.8 7.9 5.0 2 23 528 550 528 550 0.95 18 21 0.001 0.11 13.8 0.6 1 23 557 580 557 580 0.96 19 21 0.0029 0.32 12.3 0.8 1 23 587 610 587 610 0.89 20 21 0.014 1.5 10.2 2.7 3 23 624 645 623 645 0.91 21 21 2.2 2.4e+02 3.3 1.9 1 11 695 705 695 705 0.93
Sequence Information
- Coding Sequence
- ATGGACTATGTTTGCGATTACTGCAGTCGGTCATTCACTCGAAAGTACAATCTGCAGACACACATAGAGAACTGTCACCTCAACTCGTCATGCTATTGTGATATATGTGATCAAAGATTCGGCAGCCCGGCGGGGCTCCAGCTTCATCTGTCAAGAGGACACAATCGATTTGGACAAGGATTTCCAGAATGCGATCTATGTGGTAGAATCTTTACAAGAAAACAGAATATCACATCGCACATGATAACAGTTCATTTACAAGGCAGTAGGCAAGATATACGCTGCAATTTGTGCAATAAGACCTTCACGACGGATCGTAACTTGAAACGACATATAAATCAACTTCATAACCCTAACATTGAGTACCCGACTTGTGACGACTGTCACAAAGTCTTCAAAGGAAAACACTCTTTGATAGCGCATATACATTCAGCGCATAGTTCAGTTTTTAAAGGCGTTTGCAAGTGCAACTTGTGCGGTAAGGTTTACACGAATAATAGGAATTTGAAGAGACATGTGGAGATGAATCATGGGGAAAGGGGTGAGTTCAAGTGTGAGGTGTGTCCTAAAGTGTACACTTCGAATCAGAGCTTACGGCGTCACGCTAGAAGTCATAGTGGGTATAATTATTCTCAATTTAATTGTGATTTCTGTTCTAAAACGTTTGTCGGTAAAGAGAATCTTGACAGCCACATGTTGTTTTGTCATAGGGAGAATTCAAGTTCGAACGAATTTGAAGGTAGATCAAGCCTCTTCGAATGTGAATTTTGTAATAACGCATACGATTTTGAAACTAGACTAAGGTTTCACATAAAAACAGATCACTCGTTCCAAGATTTCTATAACTATTGCAAGAAGTCATTGATGAAGACAAGGACGTCGGAAAAATCGAGGAAACAGAAATTTTTGTTCTTTAATTGTGAATATTGCATCAACGCTTTCGCTACCGTCTACGATTTGAAAGACCACATGAGATCGAACCACGATAAGGAGTACAATTTGTCGACGTGCAACGTATGCTTCAGCAAATTCTTTAGTAAAGAAACGTTGGTCGAGCACAAAAAGATATGTATACCGCCGGAGAACGTTAACTCTTGCAGCCACTGCGACAAATTATTTACGGACATTTCAAGCCTTATCTTTCATACAAAAATCTTTCATCCTCAAGCGCAAGTCGCCGATTCTAACATAACATCTAGTTACATTGAAGAATCATTAGAAGCATCCTTCAAATGCCTGCACTGCGATAGGGTATACTATAGCGACAGATCACTTAAACACCACGTCAAATTGAAACACTCGACTGACGAGGCGGTCGAGTGCCAATACTGCGGAAAAATTTGCAATAACAAATACTATCTGGCATCGCATATAAAAATCGTCCATACTAATGATTCCTGGTCGAAATGCGATTACTGCGATAAGCAATTCAAATCGAAGAGAAACATACGGCGTCATATCGAATACACACACTTGGGCATGCAGAGATACAAGTGCATCGAATGCGAAACATTGTTCAAGGAAAAACGGAGCTTACGTAAGCATGTCAGGACGAAACATCCAAATTCGACAGCGTTCCCTCAATGCCATATCTGTCAAAAACGCTTCGAATCGGCGAAATCTTGCAAAATACATCTAAAACTACTTCACTCGTTCAATATGAACACACACCCATGCGATCTGTGCTCGGTTTCATTTACATCGATAGAATCGCTAAACATACATTTGTCGACAAAGCATTTAGCTGAGGACGAAATTTACAAATGCGAAGATTGTAATATGGTTTTTAAAGGGCAAGAAAGTTTCGACCAACATAATGAAAATTACCACGTGAACATACCGACATTAAAACAGAACTCTCTACCCCGTTGCATTATATGCATGAAAGATTTTAGTACTCGAAAAACACTAAAGAGACATATAAAAAAGTTCCATTGTGAGTTTAATGTCGATGAATTAGCTATATACGGTTCCAAGAAGAGAATATTCCACGTAGATTGTGTGGACTGTCTCAAAAATTTCAACGATGAGTTTTATTTTAATGCCTACCAAAAGTTGAAGCATATTCGAGATTCAATAATATTCAAATGTGAAACGTGCACGAAATCATATTCCTGTTTGGAGTACGCCATAATGAGATATAAGCAAACTTTTGATGTGTCCAAAAGTAAGTTATATTTGAGCGAGCTCTGTACAGCTGAAATGAGCGATGCTGAAGGAGATTCTAATGAAAGAATGGAACCGGAGAGTACGACGAGTGACATAAAACTAGAATCTCAAGACCAAGTCATATCTGAGTATTATATTAAGATGGAACCTTTGTCGCCATGA
- Protein Sequence
- MDYVCDYCSRSFTRKYNLQTHIENCHLNSSCYCDICDQRFGSPAGLQLHLSRGHNRFGQGFPECDLCGRIFTRKQNITSHMITVHLQGSRQDIRCNLCNKTFTTDRNLKRHINQLHNPNIEYPTCDDCHKVFKGKHSLIAHIHSAHSSVFKGVCKCNLCGKVYTNNRNLKRHVEMNHGERGEFKCEVCPKVYTSNQSLRRHARSHSGYNYSQFNCDFCSKTFVGKENLDSHMLFCHRENSSSNEFEGRSSLFECEFCNNAYDFETRLRFHIKTDHSFQDFYNYCKKSLMKTRTSEKSRKQKFLFFNCEYCINAFATVYDLKDHMRSNHDKEYNLSTCNVCFSKFFSKETLVEHKKICIPPENVNSCSHCDKLFTDISSLIFHTKIFHPQAQVADSNITSSYIEESLEASFKCLHCDRVYYSDRSLKHHVKLKHSTDEAVECQYCGKICNNKYYLASHIKIVHTNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICQKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSIESLNIHLSTKHLAEDEIYKCEDCNMVFKGQESFDQHNENYHVNIPTLKQNSLPRCIICMKDFSTRKTLKRHIKKFHCEFNVDELAIYGSKKRIFHVDCVDCLKNFNDEFYFNAYQKLKHIRDSIIFKCETCTKSYSCLEYAIMRYKQTFDVSKSKLYLSELCTAEMSDAEGDSNERMEPESTTSDIKLESQDQVISEYYIKMEPLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824942;
- 90% Identity
- iTF_00986470;
- 80% Identity
- -