Eedi036509.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000029.1:2746113-2748443[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.2e-06 0.00032 22.3 3.9 1 23 3 26 3 26 0.95 2 20 0.00033 0.047 15.5 0.3 2 23 32 54 31 54 0.95 3 20 1.7e-05 0.0025 19.5 0.3 2 23 63 85 63 85 0.97 4 20 6.4e-06 0.00092 20.9 1.7 2 23 94 116 93 116 0.95 5 20 0.00044 0.063 15.1 4.3 2 23 124 146 124 146 0.96 6 20 1.1e-06 0.00015 23.3 0.7 2 23 155 177 154 177 0.95 7 20 8.6e-07 0.00012 23.6 0.8 1 23 183 205 183 205 0.99 8 20 0.0015 0.22 13.4 1.8 1 23 213 236 213 236 0.91 9 20 0.002 0.29 13.0 1.6 1 23 252 275 252 275 0.98 10 20 0.0044 0.64 11.9 0.3 1 23 305 328 305 328 0.97 11 20 0.28 41 6.2 0.8 2 21 336 355 335 356 0.93 12 20 0.041 5.9 8.9 2.1 2 23 365 387 365 387 0.93 13 20 0.035 5.1 9.1 5.7 1 23 410 433 410 433 0.96 14 20 2.6e-05 0.0037 19.0 0.7 2 23 440 462 439 462 0.96 15 20 2.9e-05 0.0042 18.8 2.2 2 23 469 491 468 491 0.94 16 20 0.0069 0.98 11.3 2.2 1 23 497 520 497 520 0.97 17 20 0.17 25 6.9 7.1 2 23 528 550 528 550 0.95 18 20 0.0062 0.89 11.5 1.1 1 23 557 580 557 580 0.96 19 20 0.0033 0.47 12.3 0.8 1 23 587 610 587 610 0.89 20 20 0.016 2.3 10.2 2.7 3 23 624 645 623 645 0.91
Sequence Information
- Coding Sequence
- ATGGATTATGTTTGTGATTACTGCAGTCGGTCCTTTACTAGAAAATATAATCTACAGACACACATCGAGAATTGTCATCTCAATTCGTCATGCTACTGTGATATATGTGATCAAACATTTGGCAGCCCGGCGGGGTTGCAGTTACATTTGTCAAGAGGACATAATAGATTTGGACAAGGTTTCCCAGAATGTGATCTATGCGGTAGAATTTTTACAAGAAAACAAAATATCACATCACACATGATAACAGTTCATTTACAAGGCAGTAGACAGGACATACGCTGCAGTCTGTGCAACAAAACCTTCACAACTGACCGCAATTTGAAAAGGCATATTAACCAATTACATAACCCCAATATTGAATACCCAACCTGTGATAATTGTCACAAAGTCTTCAAAGGAAAGCATTCCTTAATAGCACATATACATTCGGCTCATAGTCCAGTTTTTAAGGGCGTTATAAAGTGTAACTTGTGCGGTAAAGTGTACACGAATAATAGAAATCTGAAGAGACATGTGGAAATGAATCACGGTGAACGGGGAGAATTTAAGTGTGAAGTGTGCCCTAAAGTTTACACATCCAATCAGAGCCTACGACGTCACGCAAGAAGTCATACCGCGTACAATTATTCGCAGTTTAATTGTGAGTTCTGTCCGAAAACGTTTATCGGAAAAGATAATCTCGATAACCATGTGCTGTTCTGTCATAGGGAGAATTCGAGTTCGAATGAATATGAAGGTAAATCTAGCGTTTACGAATGTGAATTTTGTAATAACACATTCGATTTCGAGTCAAGATTGCGATATCATATTAAAACTGATCACTCGTTTCAAGATTTCTATAATTATTGCAAGAAGTCGTTGATGAAGGCGTTGACGTCGGAAAAATCGAGAAaacagaaatttttatttttcaattgtgAATATTGCATTAACGCTTTCGCGACCGTTTATGATCTGAAAGATCATATGAGGTCTAATCACGACAAGGAATACAACTTGTCGACTTGCAACGTATGCTTCAGTAAATTTTTTAGCAAGGAAACGTTGATGGAACATAAAAAGATATGTATACCGCCGGAAAACGTGAATTCTTGCAGTCACTGcgataaattatttacagatatttcTAGTTTGATTTTTCATACTAAAATCTTCCATCCACAAGCGCAAATCGCCGATTCAAACATATCGTCCAGTTATATTGAAGACTCCTTGGAAGCATCCTTCAAATGTTTACACTGCGACAGGATATACTATAGTGACAGATCATTAAAACATCACGTCAAATTGAAACACACGACGGACGAAGCTGTCGAGTGCCAATACTGTGGAAAGATTtgcaataacaaatattatttagcgTCGCACATAAAAATTGTCCATAACAACGATTCCTGGTCAAAATGTGATTACTGCGACAAACAGTTCAAATCTAAGAGAAATATTAGACGGCACATAGAATATACACACCTAGGAATGCAAAGATATAAGTGTATTGAATGCGAAACGTTGTTTAAAGAAAAGAGAAGCTTGCGTAAGCACGTTAGGACAAAACATCCCAATTCGACAGCATTTCCTCAATGTCATATCTGTCATAAGCGCTTTGAATCGGCTAAATCTTGTAAAATCCATCTCAAACTACTTCATTCGTTCAATATGAACACGCATCCTTGCGATCTATGTTCGGTCTCATTCACTTCGATCGAAGCGTTACACATACATTTGTCCACGAAGCACTTGGCTGAGGACGAAATTTATAAGTGTGAGGATTGCAATATGGTTTTTAAAGGTCAAGAAAGTTTCGATCAACACAACGAGAATTATCACGTCAACCAAACAAATTTAAAACAGAATTCTTTACCCCGTTGTATCATATGCATGAAGGATTTTAGTACTCGTAAGACATTGAAGAGGCACATTAAAAAGTTCCACTGTGAGTTCAATGTTGACGAACTGGCGATATACGGTTCGAAGAAGCGAATATTCCATGTTGATTGCGTTGATTGTTTAAAGAACTTCAATgacgaattttattttaacgtcTATCAAAAAATAAAGCATGTACGCGATTCCATAATATTCAAGTGTGAAACATGCAAAAATTCGTATTCGTGCTTGGAATACGCGATCATGAGATACAAGCAAACGTTCGATGTGTCTAAAAGTAAATTGTATTTGAGCGAGCTATGTACGGCTGAAATGAGTGACCCGGAAGCCGATTCGAATGAAATTATGGAACCGGAAAGCACGACGAGCGACATAAAACAGGAATCACAACACGAAATTATATCTGAATATTGTATTAAGATGGAACCAATGTCGCCATGA
- Protein Sequence
- MDYVCDYCSRSFTRKYNLQTHIENCHLNSSCYCDICDQTFGSPAGLQLHLSRGHNRFGQGFPECDLCGRIFTRKQNITSHMITVHLQGSRQDIRCSLCNKTFTTDRNLKRHINQLHNPNIEYPTCDNCHKVFKGKHSLIAHIHSAHSPVFKGVIKCNLCGKVYTNNRNLKRHVEMNHGERGEFKCEVCPKVYTSNQSLRRHARSHTAYNYSQFNCEFCPKTFIGKDNLDNHVLFCHRENSSSNEYEGKSSVYECEFCNNTFDFESRLRYHIKTDHSFQDFYNYCKKSLMKALTSEKSRKQKFLFFNCEYCINAFATVYDLKDHMRSNHDKEYNLSTCNVCFSKFFSKETLMEHKKICIPPENVNSCSHCDKLFTDISSLIFHTKIFHPQAQIADSNISSSYIEDSLEASFKCLHCDRIYYSDRSLKHHVKLKHTTDEAVECQYCGKICNNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSIEALHIHLSTKHLAEDEIYKCEDCNMVFKGQESFDQHNENYHVNQTNLKQNSLPRCIICMKDFSTRKTLKRHIKKFHCEFNVDELAIYGSKKRIFHVDCVDCLKNFNDEFYFNVYQKIKHVRDSIIFKCETCKNSYSCLEYAIMRYKQTFDVSKSKLYLSELCTAEMSDPEADSNEIMEPESTTSDIKQESQHEIISEYCIKMEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824942;
- 90% Identity
- iTF_00986470;
- 80% Identity
- -