g15159.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000030.1:964251-966605[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0045 8.1 7.0 1.4 15 43 6 31 2 32 0.89 2 21 1.6 2.9e+03 -1.1 0.5 17 41 36 57 33 60 0.60 3 21 0.0004 0.71 10.4 0.1 18 43 68 90 65 92 0.86 4 21 2e-05 0.036 14.5 1.8 15 44 96 122 94 122 0.91 5 21 0.00034 0.61 10.6 1.0 18 44 129 152 127 152 0.94 6 21 2.5e-05 0.045 14.2 0.6 16 43 158 182 154 183 0.87 7 21 0.042 74 3.9 0.3 17 38 188 206 184 214 0.78 8 21 0.78 1.4e+03 -0.1 2.2 18 29 219 230 205 249 0.79 9 21 0.00031 0.55 10.8 0.1 16 44 258 283 251 283 0.90 10 21 0.023 42 4.7 0.4 14 43 309 335 300 336 0.86 11 21 0.053 95 3.6 0.2 11 43 367 394 363 395 0.76 12 21 0.029 51 4.5 3.4 14 43 414 440 409 441 0.84 13 21 0.1 1.8e+02 2.7 7.8 4 38 433 464 430 470 0.76 14 21 0.0017 3.1 8.4 2.3 16 43 474 498 461 499 0.79 15 21 0.037 66 4.1 0.8 17 44 504 528 500 528 0.85 16 21 1.2 2.1e+03 -0.7 0.7 18 28 535 545 531 558 0.82 17 21 5 8.9e+03 -2.7 0.1 32 43 576 587 566 588 0.71 18 21 5.8 1e+04 -2.9 1.2 14 27 591 604 573 612 0.66 19 21 0.00029 0.53 10.8 3.5 18 43 630 652 615 653 0.89 20 21 4.7 8.4e+03 -2.6 0.0 15 27 670 682 664 684 0.80 21 21 2.7 4.8e+03 -1.9 0.1 11 27 691 712 685 713 0.70
Sequence Information
- Coding Sequence
- ATGTCACAGAGCAACACAGACTATGTCTGCGATTATTGCAGCCGTTCGTTCACTAGAAAATACAATCTTCAAACTCACATCGAAAACTGTCATCTCAATTCGTCGTGCTACTGCGAAATCTGCAATCAGAGATTTGGTAGCCCCGGTGGACTGCAGCTCCACCTATCGAGAGGTCATAACAGGTTCGGCCAGGGTTTGCCGGAATGTGACATATGTGGGCGAATATTCACGAGGAAGCAAAATATCACGTCTCATATGATAACAGTACACCTGCAAGGGGGTAAACAGGACATCAGATGCAAGTTATGCAACAAGACCTTCACGACCGATCGTAATTTAAAAAGGCATATGAATCAATTGCACAACCCGGATATCGAATACCCCACTTGCGATAACTGTCATAAAGTATTCAAAGGCAAACACTCGCTTATAGCTCACATACAATCCGCGCATAGCCCTGTCTTCAAAGGATTGATTAAATGTGACATATGTGGGAAAGTTTACACGAATAATCGAAATCTGAAAAGACATATCGAGATGATTCATGGTGAAAAGGGCGAGTTTAAATGCGACATATGCCCTAAGGTGTACACGTCCAATCAGAGCTTACGACGCCACGCAAGAACTCATACGACTTACAACTATTCACAGTTTAACTGTGACTATTGTTCGAAGACATTCATTGGCAAGGACAGTCTCGATAATCATGTAATGTTCTGTCATAGACAAGAGAATTCAAGCTCCAATGAATACGATGCAGGCTCCAGTCGTGTCTATGAATGTGATTTTTGTAACAATGCCTATGAATACGAATCAAAACTAAGATATCATATAAAATCTGAGCATTCGTTTCAAGAGTTTTATAGCTATTGCAAGAAAATGCTCTTAAAAGCGACATGGAGTTCAGAGAAAACAATGAAACGGAATCTATTTTACAATTGTGAATACTGTATTAACGCTTTTTCGACTGTTTACGATTTAAAAGATCACATGCGATCCCATCATGATAAGGAGTATAGTTTGTCGACGTGTAATGTCTGCTTCAGCAAGTTCTTCAGCAGGGAAACGCTGGTAGATCATAAGAAAATCTGTTTCCCGCCCGATAACGTGAACTCGTGCAGTCATTGCGACAAATTGTTCACAGATATATCAAGTTTGATATTTCACACTAGAATTTTTCATCCTCAAGCTCAAATCGCCGATTCGAATATATCCTCAACCAATATGGAAGATTCGTCTGAAGCATCCTTTAAGTGTATTCACTGTGATCGTATATATTACAGCGAAAGATCTCTCAAACATCACGTTAAATTGAAACACACAACAGAACAGGCTGTTGAGTGTCAAACTTGCGGAAAAATATGCAACAACAAGTACTATCTGGCGTCTCACATGAAAATCGTTCATAATAACGACGCGTGGTCGAAGTGCGACTATTGTGACAAACAATTTAAATCGAAGAGGAATATACGACGGCATATCGAATACACCCATTTAGGTATGCAGAGGTATAAGTGTATTGAGTGTGAGACGCTTTTTAAGGAGAAGCGAAGTCTGAGGAAGCATGTTAGGACGAAGCATCCGAACTCGACAGCGTTTCCTCAGTGCCATATATGCCAGAAGCGATTCGAATCGGCTAAATCGTGTAAAATTCATCTGAAATTATTGCATTCTTTCAATATGAATACGCATCCTTGTGATCTTTGCTCGGTTTCGTTCACTTCGATCGAAGCTCTGAACATACATCTATCGACGAAACATTTAGCTGaggatgaaatatataaatgtgaagAGTGCAATATGGTTTTCAAAGGCCAGGAGAAGTTTGACAACCACAACGAGAACTACCACACCAATGCAACAACGTCGAAGCAAAAGCCGCTTCCTCGTTGCATTATATGCATGAAAGATTTCAGTACTCGAAAAACTTTGAAACGGCACATAAAGAAGTTCCACTGTGAGTTTAATGTGGACGAATTAGCGACATATGGGTCTAGGAATCAAACTTTCAACGTTGATTGCGGGGAATGCTTGAAGAACTTCAATGATGACTTTTACTTCGGTATTTATCAGAAGCTAAAACATCTTCGCGattcagttatatttaaatgtgataCGTGTGTCACGTCCTATTCGAGCATAGAGTACGCTATACAAAGATATAAGCAGACGTTCGATGTATCGAAGAGTAAATTGTATTTGAGCGAGCTGTGTACGACTGAAATGAGTGACGCTGATGACTTCGAGTCGAACGAAGTAATGGAACCGGAGAGTACAACGAGTGACATCAAAATAGAACCCCAAGATGACATTGATTCCGAGTTTGTCATTAAATTGGAACCTATGACGCCGTAA
- Protein Sequence
- MSQSNTDYVCDYCSRSFTRKYNLQTHIENCHLNSSCYCEICNQRFGSPGGLQLHLSRGHNRFGQGLPECDICGRIFTRKQNITSHMITVHLQGGKQDIRCKLCNKTFTTDRNLKRHMNQLHNPDIEYPTCDNCHKVFKGKHSLIAHIQSAHSPVFKGLIKCDICGKVYTNNRNLKRHIEMIHGEKGEFKCDICPKVYTSNQSLRRHARTHTTYNYSQFNCDYCSKTFIGKDSLDNHVMFCHRQENSSSNEYDAGSSRVYECDFCNNAYEYESKLRYHIKSEHSFQEFYSYCKKMLLKATWSSEKTMKRNLFYNCEYCINAFSTVYDLKDHMRSHHDKEYSLSTCNVCFSKFFSRETLVDHKKICFPPDNVNSCSHCDKLFTDISSLIFHTRIFHPQAQIADSNISSTNMEDSSEASFKCIHCDRIYYSERSLKHHVKLKHTTEQAVECQTCGKICNNKYYLASHMKIVHNNDAWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICQKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSIEALNIHLSTKHLAEDEIYKCEECNMVFKGQEKFDNHNENYHTNATTSKQKPLPRCIICMKDFSTRKTLKRHIKKFHCEFNVDELATYGSRNQTFNVDCGECLKNFNDDFYFGIYQKLKHLRDSVIFKCDTCVTSYSSIEYAIQRYKQTFDVSKSKLYLSELCTTEMSDADDFESNEVMEPESTTSDIKIEPQDDIDSEFVIKLEPMTP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824942;
- 90% Identity
- iTF_01079231;
- 80% Identity
- iTF_01078394;