Npol005892.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992271.1:1836049-1838403[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.5e-07 1.4e-05 25.8 3.1 1 23 8 31 8 31 0.95 2 20 0.0008 0.071 14.1 0.4 2 23 37 59 36 59 0.95 3 20 5.2e-06 0.00046 21.0 0.3 2 23 68 90 68 90 0.97 4 20 1.5e-05 0.0013 19.6 2.0 2 23 99 121 98 121 0.94 5 20 5.2e-05 0.0046 17.8 2.5 2 23 129 151 129 151 0.96 6 20 2.6e-07 2.3e-05 25.1 0.4 2 23 160 182 159 182 0.95 7 20 2e-07 1.8e-05 25.4 1.0 1 23 188 210 188 210 0.99 8 20 0.0035 0.31 12.1 2.1 1 23 218 241 218 241 0.91 9 20 0.0068 0.6 11.2 0.8 1 23 259 282 259 282 0.98 10 20 0.001 0.089 13.8 1.7 1 23 312 334 312 335 0.95 11 20 0.18 16 6.7 0.5 2 21 343 362 342 363 0.93 12 20 0.017 1.5 9.9 2.0 2 23 372 394 372 394 0.95 13 20 0.16 14 6.9 5.2 1 23 417 440 417 440 0.95 14 20 3.8e-05 0.0033 18.3 0.9 2 23 447 469 446 469 0.96 15 20 2.7e-05 0.0023 18.8 2.2 2 23 476 498 475 498 0.94 16 20 0.0062 0.55 11.3 2.2 1 23 504 527 504 527 0.97 17 20 0.073 6.5 7.9 5.0 2 23 535 557 535 557 0.95 18 20 0.0014 0.13 13.3 0.3 1 23 564 587 564 587 0.96 19 20 0.017 1.5 10.0 2.3 1 23 594 617 594 617 0.89 20 20 0.014 1.3 10.2 2.7 3 23 631 652 630 652 0.91
Sequence Information
- Coding Sequence
- ATGTCACAGAGCAACACAGACTATGTCTGCGATTACTGCGGTCGTTCATTCACTAGAAAATACAATCTTCAAACTCACATCGAAAACTGTCACCTCAATTCGTCGTGCTACTGTGAAATCTGCAATCAGAGATTTGGAAGCCCCGGTGGACTGCAGCTCCACTTATCTAGAGGTCATAACAGGTTCGGCCAGGGTTTGCCGGAATGCGATATATGTGGGAGAATATTCACGAGGAAGCAAAATATTACTTCGCATATGATAACAGTACATCTGCAAGGGGGCAAACAGGACATCCGATGCAAATTATGCAACAAGACATTCACGACTGATCGTAATTTGAAAAGGCATGTGAATCAATTACACAACCCGGATATCGAATACCCCACTTGCGATAACTGTCATAAAGTATTCAAGGGAAAACATTCGCTGATAGCCCACATACAGTCCGTGCATAGTCCTGTCTTTAAAGGATTGATTAAATGTAACATATGTGGCAAAGTGTACACGAATAATCGAAATCTGAAACGACACGTAGAGATGATTCATGGTGAAAAGGGTGAGTTTAAATGCGACATATGCCCTAAGGTGTACACATCCAACCAGAGCTTACGACGCCACGCACGAACCCATACGAATTACAATTATTCACAATTCAACTGTGAGTATTGTTCGAAGACATTCATTGGCAAGGACAGTCTTGGTAATCACGTATTGTTCTGTCATAGACAAGAAAATTCAAGCTCCAATGAATACGAGGCGGGGTCTAGTCGTATCTATGAATGTGAATTTTGTAATAATGGCTATGAATACGAGTCAAAACTAAGGTATCATATAAAGTCTGAGCATTCGTTCCAAGAGTTCTATAGCTATTGCAAGAAAATGCTCTTAAAAGCGACTTGGAGCTCAGAGAAACCAAGGAGACGGGATCAATTTTACAACTGCGAATATTGCATAAACGCGTTTTCGACTGTTTACGATTTAAAAGATCACATGCGTTCCCATCATGATAGGGAATATAGTTTGTCCACGTGTAACGTCTGCTTCAGCAAGTTCTACAGCAGAGAAACGTTGATAGATCATAAGAAAATCTGTTTCCCGCCCGATAATGTGAACTCTTGCAGCCATTGCGACAAATTGTTCACGGATATATCCAGTTTGATATTTCACACTAGAATTTTCCATCCTCAAGCTCAAATCGCCGATTCGAACATATCCTCTACTAACATGGAAGACTCGTCTGAAGCGTCCTTTAAATGTATACACTGTGATCGTATATATTACAGCGAAAGATCTCTAAAACACCACGTTAAGTTGAAACACACAACAGAACAAGCTGTTGAATGTCAAACGTGTGGAAAAATATGCAATAACAAGTACTATTTGGCGTCTCACATGAAAATCGTTCACAATAATGACGCATGGTCGAAGTGCGATTATTGTGATAAACAGTTTAAATCGAAGAGGAATATACGACGGCATATTGAATACACCCATTTAGGTATGCAGAGGTATAAGTGTATCGAATGTGAGACGCTTTTTAAGGAGAAGCGAAGTCTTAGAAAGCATGTTAGGACGAAGCATCCGAACTCAACAGCGTTTCCTCAATGCCATATATGTCAAAAGCGATTCGAATCGGCTAAATCCTGTAAAATTCATCTGAAATTACTGCATTCTTTCAATATGAATACACATCCTTGTGATCTTTGTTCGGTTTCGTTCACGTCGATAGAAGCTTTAAACATACATCTGTCGACGAAACATTTGGCTGAAGACGAGATATATAAATGCGAAGAGTGCAACATGGTTTTCAAAGGTCAGGAGAAGTTTGACCACCACAATGAGAACTACCACGTCAATGTGCCGACTTCAAAGCAAAAGCCGCTTCCTCGTTGCATTATATGCATGAAAGATTTTAGTACTCGAAAAACTCTGAAACGGCACATAAAGAAGTTCCACTGTGAGTTTAATGTGGACGAACTAGCGACTTATGGATCTAGAAATCAAACTTTCAATGTTGATTGCGCGGAATGTTTAAAGAACTTCAATGATGACTTTTACTTCAGTATTTATCAAAAGCTAAAACATCTTCGTGATTCCGTAATATTTAAATGTGAATCGTGCGTCACGTCTTATTCGAGCATAGAGTACGCTATACAAAGATATAAGCAGACTTTCGATGTATCAAAGAGTAAATTGTATTTGAGCGAGCTATGTACGACTGAAATGAGCGACGCTGATGACTTTGAGTCGAACGAAATAATGGAACCAGAGAGTACAACGAGTGACATCAAAATAGAACCCCAAGATGAAATTGATTCCGAATGTGTCATTAAATTGGAACCTATGACGCCATAA
- Protein Sequence
- MSQSNTDYVCDYCGRSFTRKYNLQTHIENCHLNSSCYCEICNQRFGSPGGLQLHLSRGHNRFGQGLPECDICGRIFTRKQNITSHMITVHLQGGKQDIRCKLCNKTFTTDRNLKRHVNQLHNPDIEYPTCDNCHKVFKGKHSLIAHIQSVHSPVFKGLIKCNICGKVYTNNRNLKRHVEMIHGEKGEFKCDICPKVYTSNQSLRRHARTHTNYNYSQFNCEYCSKTFIGKDSLGNHVLFCHRQENSSSNEYEAGSSRIYECEFCNNGYEYESKLRYHIKSEHSFQEFYSYCKKMLLKATWSSEKPRRRDQFYNCEYCINAFSTVYDLKDHMRSHHDREYSLSTCNVCFSKFYSRETLIDHKKICFPPDNVNSCSHCDKLFTDISSLIFHTRIFHPQAQIADSNISSTNMEDSSEASFKCIHCDRIYYSERSLKHHVKLKHTTEQAVECQTCGKICNNKYYLASHMKIVHNNDAWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICQKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSIEALNIHLSTKHLAEDEIYKCEECNMVFKGQEKFDHHNENYHVNVPTSKQKPLPRCIICMKDFSTRKTLKRHIKKFHCEFNVDELATYGSRNQTFNVDCAECLKNFNDDFYFSIYQKLKHLRDSVIFKCESCVTSYSSIEYAIQRYKQTFDVSKSKLYLSELCTTEMSDADDFESNEIMEPESTTSDIKIEPQDEIDSECVIKLEPMTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824942;
- 90% Identity
- iTF_01079231;
- 80% Identity
- iTF_01080071;