Nio020759.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- -
- Assembly
- GCA_905147045.1
- Location
- LR989925.1:5337081-5341902[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0035 11 6.6 2.1 14 43 5 31 2 32 0.89 2 22 1 3.3e+03 -1.3 0.4 17 43 36 59 33 60 0.64 3 22 0.00023 0.74 10.4 0.1 18 43 68 90 65 92 0.86 4 22 1.9e-05 0.062 13.8 1.4 15 43 96 121 94 122 0.90 5 22 0.00019 0.63 10.6 1.0 18 44 129 152 127 152 0.94 6 22 3.4e-06 0.011 16.3 1.4 16 43 158 182 155 183 0.91 7 22 0.027 87 3.8 0.3 17 38 188 206 184 214 0.79 8 22 0.43 1.4e+03 -0.1 2.8 18 29 219 230 205 249 0.80 9 22 0.00037 1.2 9.7 0.0 16 44 259 284 251 284 0.90 10 22 0.022 71 4.0 0.2 17 43 314 337 306 338 0.88 11 22 6.3 2e+04 -3.8 0.1 18 26 345 353 344 360 0.72 12 22 0.038 1.2e+02 3.3 0.2 11 41 369 394 365 397 0.74 13 22 0.015 47 4.6 3.4 14 43 416 442 411 443 0.83 14 22 0.064 2.1e+02 2.6 7.3 4 38 435 466 432 472 0.76 15 22 0.0017 5.5 7.6 3.0 17 43 477 500 465 501 0.79 16 22 0.021 68 4.1 0.8 17 44 506 530 502 530 0.85 17 22 0.66 2.1e+03 -0.7 0.7 18 28 537 547 533 560 0.82 18 22 2.9 9.3e+03 -2.7 0.1 32 43 578 589 568 590 0.71 19 22 5.9 1.9e+04 -3.7 1.8 14 28 593 607 581 615 0.70 20 22 3e-05 0.095 13.2 0.8 18 43 632 654 622 655 0.93 21 22 3.4 1.1e+04 -3.0 0.0 15 27 672 684 668 686 0.80 22 22 1.6 5.3e+03 -2.0 0.1 12 27 699 714 688 715 0.74
Sequence Information
- Coding Sequence
- ATGTCACAGAGCCACACAGACTATGTCTGCGATTACTGCGCCCGTTCGTTCACTAGAAAATACAATCTTCAAACTCACATTGAAAACTGTCACCTCAATTCGTCATGCTACTGTGATATATGCAATCAAAGATTTGGCAGCCCCGCTGGACTGCAGCTCCATTTGTCGAGAGGCCATAACAGGTTCGGCCAGGGTTTGCCAGAGTGTGATATATGCGGTAGAATATTCACGAGAAAGCAAAATATCACGTCACACATGATAACAGTCCATCTGCAAGGGGGCAGACAGGACATCCGTTGCAAAATATGCAACAAGACATTCACGACTGATCGTAATTTGAAAAGACATGTTAATCAATTACACAACCCGGATATCGAGTACCCCACATGCGATAACTGCCATAAAGTTTTTAAAGGTAAGCACTCGTTAATAGCCCACATACAATCCGCGCATAGTTCCGTCTTTAAAGGTCTCATTAAATGTAACCTGTGCGGTAAAGTGTACACGAACAATCGAAATCTGAAAAGGCACGTCGAAATGAATCATGGGGAAAGGGGCGAGTACAAATGCGACATATGCCCAAAGGTGTACACGTCTAATCAGAGCTTACGACGTCACGCACGGACTCACACCGCCTACAATTATTCGCAGTTTAACTGTGAGCATTGTTCAAAGACATTCATTGGCAAGGACAGTCTTGAAAATCATGTACTGTTCTGCCATAGACAAGAAAATTCAAGTTCCAATGAATACGATGCAGCTGGTTCTAGTCGTATCTATGAATGTGAATTTTGTAACAATGGCTTTGAATACGAGTCCAGATTGAGGTATCATATTAAGTCTGAGCATTCGTTCCAAGAGTTCTATAGCTATTGCAAGAAAACGCTCTTAAAAGCGACTTGGAGCTCAGAGAAGCCAAGGAAACAGAATCTATTGTTCTACAATTGCGAATATTGTATAAACGCATTTTCGACTGTTTACGATTTAAAGGATCACATGCGTTCCCATCATGATAGGGAATACAATCTCTCTACGTGTAACGTCTGCTTCAGCAAGTTTTTCAGCAAAGAAACATTGACAGATCATAAGAAAATCTGTTTCCCGCCCGATAATGTAAACTCGTGCAGCCATTGCGACAAATTGTTCACGGATATATCGAGTTTGAAATTTCATACGAGAATTTTTCATCCACAAGCTCAAGTCGCAGATTCGAACATATCCTCTACGAACATGGACGACTCGTCCGAAGCGTCCTTCAAATGTATACACTGTGATCGTATATATTACAGTGAAAGGTCTCTGAAACATCACGTTAAATTAAAACACACGACCGAACAAGCTGTCGAATGTCAATCGTGTGGAAAAATATGCAACAATAAGTACTATTTGGCGTCTCACATGAAAATCGTTCACAATAATGATGCGTGGTCGAAATGCGATTATTGTGATAAACAGTTTAAATCAAAGAGAAATATACGACGGCATATCGAGTACACCCATTTAGGGATGCAGAGATATAAGTGTATTGAATGTGAAACGCTTTTTAAGGAGAAGCGAAGTCTCAGGAAGCATGTTAGAACGAAACATCCAGACTCCACGGCATTTCCTCAATGTCATATATGCCAAAAACGTTTCGAATCAGCGAAATCCTGTAAAATTCACCTGAAATTACTGCATTCTTTCAATATGAATACGCATCCGTGTGATCTTTGTTCAGTTTCGTTCACGTCGATCGAAGCCCTGAATATACATCTGTCGACGAAACATTTGGCTGAGGACGAGATTTATAAATGCGAAGAGTGCAACATGGTTTTCAAAGGTCAGGAGAGGTTTGACCATCACAATGAGAGCTACCACATCAATGTGCCGACGTCACAGCAAAAGCCGCTGCCACGATGCATAATATGCATGAAAGATTTTAGTACCAGAAAAACTTTGAAACGGCACATAAAGAAATTCCACTGCGAGTTTAATGTCGACGAACTAGCGACTTATGGTTCTAGAAATCGTACTTTTAACGTCGATTGCGGTGAATGCTTAAAGAACTTCAACGATGATTTTTACTTCAGTGTTTATCAAAAGCTAAAACATCTTCGTGATTCCGTAATATTTAAATGTGAAACTTGTGTCACGTCCTACTCAAGCTTAGAGTACGCTATACAAAGATACAAGCAGACATTCGATATATCCAAGAGTAAATTGTATTTGAGCGAGCTATGTACGACTGAAATGAGTGACGCCGATGATTTTGAGTATAACGAAATAATGGAACCGGAGAGTACAACGAGTGACATCAAAATAGAACCCGTAGACGAAATGAATTCCGAGTGTGTCATTAAGTTGGAACCAATGACGCCATAA
- Protein Sequence
- MSQSHTDYVCDYCARSFTRKYNLQTHIENCHLNSSCYCDICNQRFGSPAGLQLHLSRGHNRFGQGLPECDICGRIFTRKQNITSHMITVHLQGGRQDIRCKICNKTFTTDRNLKRHVNQLHNPDIEYPTCDNCHKVFKGKHSLIAHIQSAHSSVFKGLIKCNLCGKVYTNNRNLKRHVEMNHGERGEYKCDICPKVYTSNQSLRRHARTHTAYNYSQFNCEHCSKTFIGKDSLENHVLFCHRQENSSSNEYDAAGSSRIYECEFCNNGFEYESRLRYHIKSEHSFQEFYSYCKKTLLKATWSSEKPRKQNLLFYNCEYCINAFSTVYDLKDHMRSHHDREYNLSTCNVCFSKFFSKETLTDHKKICFPPDNVNSCSHCDKLFTDISSLKFHTRIFHPQAQVADSNISSTNMDDSSEASFKCIHCDRIYYSERSLKHHVKLKHTTEQAVECQSCGKICNNKYYLASHMKIVHNNDAWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPDSTAFPQCHICQKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSIEALNIHLSTKHLAEDEIYKCEECNMVFKGQERFDHHNESYHINVPTSQQKPLPRCIICMKDFSTRKTLKRHIKKFHCEFNVDELATYGSRNRTFNVDCGECLKNFNDDFYFSVYQKLKHLRDSVIFKCETCVTSYSSLEYAIQRYKQTFDISKSKLYLSELCTTEMSDADDFEYNEIMEPESTTSDIKIEPVDEMNSECVIKLEPMTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824942;
- 90% Identity
- iTF_01079231;
- 80% Identity
- iTF_01079231;