Kina011612.1
Basic Information
- Insect
- Kallima inachus
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:5554078-5560297[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.8e-06 0.00016 22.3 3.9 1 23 8 31 8 31 0.95 2 20 0.00074 0.067 14.0 0.4 2 23 37 59 36 59 0.95 3 20 1.4e-05 0.0013 19.5 0.3 2 23 68 90 68 90 0.97 4 20 1.9e-06 0.00017 22.2 2.1 2 23 99 121 98 121 0.95 5 20 1.2e-05 0.0011 19.7 1.9 2 23 129 151 129 151 0.96 6 20 1.8e-06 0.00017 22.2 0.8 2 23 160 182 159 182 0.95 7 20 1.3e-06 0.00011 22.8 1.0 1 23 188 210 188 210 0.99 8 20 0.0011 0.099 13.5 1.7 1 23 218 241 218 241 0.92 9 20 0.076 7 7.7 0.4 1 23 260 283 260 283 0.98 10 20 0.0017 0.15 12.9 1.1 1 23 314 336 314 337 0.95 11 20 0.15 14 6.8 1.2 2 21 345 364 344 365 0.93 12 20 0.024 2.2 9.3 2.2 2 23 374 396 374 396 0.93 13 20 0.028 2.6 9.1 5.7 1 23 420 443 420 443 0.96 14 20 2e-05 0.0019 18.9 0.7 2 23 450 472 449 472 0.96 15 20 2.3e-05 0.0021 18.8 2.2 2 23 479 501 478 501 0.94 16 20 0.0055 0.5 11.3 2.2 1 23 507 530 507 530 0.97 17 20 0.058 5.3 8.1 4.4 2 23 538 560 538 560 0.95 18 20 0.0013 0.12 13.3 0.3 1 23 567 590 567 590 0.96 19 20 0.032 2.9 8.9 2.1 1 23 597 620 597 620 0.89 20 20 0.013 1.2 10.2 2.7 3 23 634 655 633 655 0.91
Sequence Information
- Coding Sequence
- ATGTCACAAAACCACACAGACTATGTCTGCGATTACTGCAGCCGATCATTTACTAGAAAATACAATCTTCAGACTCACATCGAAAACTGTCACTTAAATTCGTCTTGTTACTGTGAAATATGCAATCAAAGATTTGGCAGTCCCGCTGGATTACAGCTTCACTTATCGCGAGGCCACAATAGATTCGGTCAAGGTTTACCAGAATGTGATTTATGCGGCAGAATTTTTACAAGAAAGCAAAATATCACATCTCACATGATAACAGTGCATTTGCAAGGGAGCAGACAGGACATCCGATGCAATTTATGCAATAAAACATTCACGACCGATCGCAATTTGAAACGGCACATGAACCAGTTACATAACCCTGATATTAAGTATCCCACATGCGATGATTGCCATAAAGTCTTCAAAGGAAAACATTCTTTAATAGCACATATTCAATCCGCGCATAGTCCAATTTACAAAGGCGTTATTAAGTGCAACTTGTGTGATAAAGTGTACACGAATAATAGGAACCTGAAGAGGCATGTCGAGATGAATCACGGGGAAAGAGGCGAGTTCAAATGTGAATTATGCCCTAAAGTTTACACGTCCAATCAGAGTTTACGACGGCACGCACGAAGTCATACAACTTTCAGTTTTACTCAATACAATTGCGAGTTTTGTCCGAAAACGTTTGTTGGAAAGGAGAATCTCGACAACCATGTCTTGTTCTGTCATAGACAGGAAAATTCTAGTTCAAATGACTATGATATAGCCGGTTCGAATAGATTTTACGAATGTGAATTTTGTGCCAGTGCCTATGAATACGAGTCCAGATTGAGATATCATATAAAAACGGAACATTCGTTCCAAGATTTCTATAGCTATTGCAAGAAATCCCTAATAAAAGCGACTTGGTCATCAGAAAAATCGAGGAAACAGAAATATCTTTTCTATAATTGTGAATATTGTATTAACGCGTTCGCAACAGTTTACGATTTGAAGGATCATATGAGATCCCATCATGACAAAGAATATAATTTGTCGACTTGCAACGTCTGCTTCAGCAAATTCTTCAGCAAGGAAACATTAAGGGATCATAAGAAAATATGTTTTCCACCTGACAATGTAAATACTTGCAGTCATTGTGACAAATTATTTACAGACGTATCTAGTCTTATTTTCCACACAAAAATATTCCATCCTCAAGCCCAAATCGCTGATTCCAATATATCCTCTAGTTACGTCGAAGATTCTTTGGAAACGGCCTCGTTTAAGTGTTTACATTGTGACAGAATATATTACAGCGATAGATCATTGAAACATCATGTTAAATTGAAACATACGACAGACGAAGCTGTCGAATGCCAGTATTGTGGAAAAATATGTAATAATAAATACTATTTAGCTTCGCACATAAAAATCGTCCATAATAACGATTCTTGGTCGAAATGCGATTATTGCGACAAACAATTCAAGTCAAAGAGGAATATCCGACGTCATATAGAGTATACCCATTTGGGAATGCAAAGATACAAGTGCATAGAATGCGAGACGCTATTTAAAGAAAAGAGGAGTCTTCGTAAACATGTTAGGACCAAACATCCGAATTCCACAGCGTTCCCTCAATGCCATATATGCGAAAAGCGTTTCGAATCGGCAAAGTCCTGTAAAATTCACTTAAAACTATTACATTCTTTTAATATGAACACCCATCCGTGCGACTTATGCTCAGTTTCCTTTACATCTATCGAGGCGTTGAACATTCATTTGTCGACAAAACATTTAGCTGAGGACGAAATTTATAAATGCGAAGAATGCAACATGGTTTTCAAAGGGCAGGAAAGATTCGACCATCACAATGAAAGCTATCATGTTAATATACCAACAGTACAGCAAAAATCACTCCCCAGATGTATTATATGCATGAAAGATTTTAGCACACGCAAAACACTGAAACGGCACATAAAAAAGTTCCATTCTGAATTCAATGTTGACGAGTTAGCGATATACGGATCGAGGAAACGCGTTTTTAACGTCGAATGTGTTGAATGTGTAAAGAATTTTAACGACGAATTCTACTTCAGCGTTTATCAAAAGTTAAAACACATTAGGGACTCGATTATCTTCAAATGTGAAACCTGTACCAGTTCGTATTCGTGTTTGGAGTACGCGATACAGAGATACAAACAAACTTTTGATATATCTAAGAGTAAATTGTACTTGAGCGAGCTTTGTACAGCTGAAATGAGTGACGCTGAAGAAGCCGACTCAAACGAAGTGATGGAACCAGAAAGTACTACAAGTGATATAAAAATAGAATCTCAAAATGATATGATATCTGAATATTATATAAAAATGGAACCTATGTCGCCGTGA
- Protein Sequence
- MSQNHTDYVCDYCSRSFTRKYNLQTHIENCHLNSSCYCEICNQRFGSPAGLQLHLSRGHNRFGQGLPECDLCGRIFTRKQNITSHMITVHLQGSRQDIRCNLCNKTFTTDRNLKRHMNQLHNPDIKYPTCDDCHKVFKGKHSLIAHIQSAHSPIYKGVIKCNLCDKVYTNNRNLKRHVEMNHGERGEFKCELCPKVYTSNQSLRRHARSHTTFSFTQYNCEFCPKTFVGKENLDNHVLFCHRQENSSSNDYDIAGSNRFYECEFCASAYEYESRLRYHIKTEHSFQDFYSYCKKSLIKATWSSEKSRKQKYLFYNCEYCINAFATVYDLKDHMRSHHDKEYNLSTCNVCFSKFFSKETLRDHKKICFPPDNVNTCSHCDKLFTDVSSLIFHTKIFHPQAQIADSNISSSYVEDSLETASFKCLHCDRIYYSDRSLKHHVKLKHTTDEAVECQYCGKICNNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICEKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSIEALNIHLSTKHLAEDEIYKCEECNMVFKGQERFDHHNESYHVNIPTVQQKSLPRCIICMKDFSTRKTLKRHIKKFHSEFNVDELAIYGSRKRVFNVECVECVKNFNDEFYFSVYQKLKHIRDSIIFKCETCTSSYSCLEYAIQRYKQTFDISKSKLYLSELCTAEMSDAEEADSNEVMEPESTTSDIKIESQNDMISEYYIKMEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824942;
- 90% Identity
- iTF_00824942;
- 80% Identity
- iTF_00843708;