Edod016329.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000100.1:1332685-1336503[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.9e-12 4.1e-09 36.3 0.0 4 39 151 187 148 191 0.90 2 4 1.8e-11 1.2e-08 34.8 0.4 1 39 202 240 202 243 0.93 3 4 3.3e-16 2.3e-13 50.0 0.1 2 45 258 302 257 302 0.96 4 4 1.3e-17 9e-15 54.4 0.0 1 44 309 353 309 354 0.96
Sequence Information
- Coding Sequence
- ATGCCCAACTCTGGAACTGCTGCTATAAAATGTGAACCTGTCTCTGCTGAAGAAGACAGCAGTCGTCATTTAACTAATCTCTTCCTCAATAACACGAGTCATGAAGTGCTGGAGGACTTAGCCCCGTTAGCGCCGGCCGGGCCCGCGGCGACGCCAGTCTGCGTCAAGCAGGAGCCCGTGGAGCACCCTGCGCAGAGCTTCGAGACCTTGGAGTCTGCTGTACATACGGAATCTTTGTTGGAGAGACACATGGCGAGGACATCTGACACATCTGAAGTGCTCAACTCGGAAAACTTCACGATGCTACAAGCTATCAAGGATGAACCTTGTTTTGAAGGAGAATGCCAATCCACTGAGCAGCAGCTGACCAGCGGCGACGAGCAGAGCGACTCGAGCTGCCGACTCGAGCCCGACGGCACACGCGGCAGCCCCAAGACATGGAGGCAGCAGGACATGGACCACGCACTCGAGGCACTGCGGAATCATCACATGAGTCTCACCAAGGCGTCATCAACCTATGGTATTCCTTCAACGACGCTGTGGCAGCGCGCGCACCGGCTTGGGATCGACACGCCGAAGAAGGAAGGCTGCGCCAAGTCTTGGACCGAGGCGGATCTGCGATCTGCCCTGCAAGCGCTTCGAGCTGGTGCCATTTCCGCCAATAAGGCGAGCAAGGCTTATGGTATACCAAGCAGCACACTGTACAAGATAGCTCGCCGCGAGGGTATCCGACTGGCTGCGCCGTTCAACGCGGCACCAGTGGCGTGGCGGCGCGGAGATTTGCAGCGCGCGCTCCAAGCCATCAGAACTGGACGCGCCTCCGTGCAGCGTGCCGCCACGCAGTACGGGATACCTACTGGTACCCTTTACGGTCGTTGTAAACGAGAAGGCATAGAGTTGTCTAGATCGAATCCCACACCTTGGTCAGAAGACGCAATGGGAGAGGCGTTAGAAGCTGTGAGgaTTGGTCAGATGTCGATTAACCAGGCTGCTATCCACTTTAACTTGCCATATTCTTCACTCTATGGAAGATTCAAAAGGTGCAAATATCAGGCTCAGCCGTTATCTCATCACGAAGTCCAAAACCTCCCGGAAATACATCAAGATTTGAACTACTACCATCAGATGGCAGGATACCAGGAGCAGGAACCACACCAACCATACTCTCAGGAATTCATCCCGGACGCATCACCATCTCCTAACAACACGATGCTACAAGATCCTTTCTCAGGACAGACGGTGTATTACAGCCAGAATTTTAGCAGTATAGTCACCAGCTGA
- Protein Sequence
- MPNSGTAAIKCEPVSAEEDSSRHLTNLFLNNTSHEVLEDLAPLAPAGPAATPVCVKQEPVEHPAQSFETLESAVHTESLLERHMARTSDTSEVLNSENFTMLQAIKDEPCFEGECQSTEQQLTSGDEQSDSSCRLEPDGTRGSPKTWRQQDMDHALEALRNHHMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGCAKSWTEADLRSALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLQRALQAIRTGRASVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQAQPLSHHEVQNLPEIHQDLNYYHQMAGYQEQEPHQPYSQEFIPDASPSPNNTMLQDPFSGQTVYYSQNFSSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00696405; iTF_00700929; iTF_00700016; iTF_00703856; iTF_00697247; iTF_00704872; iTF_00702816; iTF_00705908; iTF_00699097;
- 90% Identity
- iTF_00696405;
- 80% Identity
- -