Esub009319.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438636.1:7917136-7924174[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.1 3.4e+03 -1.2 0.0 30 39 99 108 98 112 0.81 2 5 1.1e-11 1.2e-08 35.4 0.0 4 39 151 187 148 191 0.90 3 5 1.2e-12 1.3e-09 38.5 0.2 1 39 202 240 202 244 0.94 4 5 5.7e-14 6.2e-11 42.8 0.0 2 45 258 302 257 302 0.96 5 5 1.2e-17 1.3e-14 54.5 0.0 1 44 309 353 309 354 0.96
Sequence Information
- Coding Sequence
- ATGCCAAATTCTGGACCTGCTGCAGTAAAATGTGAACCTGCCTCTGATGAAGAAGATAATAGTCGTCAGTTAACTGATCTCTTTCTAAATGACACGAGCCATGAAGTGCTGGAGGAGCTAGCCCCGTTAGCGCCGGCCGGACCCGCGGCGACACCGGTCTGCGTCAAACAGGAGCCCGTGGAGCACCCTGCGCAAAGCCTCGAGACCTTGGTGTCTGCTACACATACCGCGGGATCTTTGTTGGAGAGACACATTGCGATTTTGAGGTCATCGGAACTGCTTAGCTCGGATAACTTCACGACGCTGCAAGCTGTCAAGGAGGAGCCTACTTCTGAAGGagAATGCCCATCCACCGAGCAGCATCCCACCAGCGGCGACGAGCAGAGCGATTCAAGCGGGCGACTGGAGCCAGACTGCACACGCGGCAGCCCCAAGACCTGGAGGCAGCAGGACATGGATAACGCGATCGACGCACTGCGAAACCATCACATGAGTCTCACTAAGGCGTCATCAACCTATGGTATTCCTTCAACAACGCTGTGGCAGCGTGCGCATCGGCTTGGCATCGACACGCCGAAGAAGGAAGGATGCGCCAAGTCGTGGAGCGAGGAGGATCTGCGAGCTGCCCTACACGCGCTTCGGGCCGGTACCATTTCCGCCAATAAGGCCAGTAAGGCTTATGGTATACCAAGCAGCACACTGTACAAGATAGCTCGCCGTGAGGGCATCCAGCTAGCTGCGCCGTTTAACGCGGCCCCGGTGTCGTGGCGACGCGGAGACTTGCAGTGCGCGCTCCAAGCCATCAAAACTGGACGCGCCTCCGTGCAGCGTGCTGCCACGCAGTACGGGATACCTACTGGTACCCTTTACGGGCGTTGCAAACGAGAAGGCATAGAATTATCTCGATCGAACCCAACGCCTTGGTCTGAAGACGCAATGGGAGAGGCGTTAGAAGCTGTTAGAATTGGTCAGATGTCGATTAACCAGGCAGCTATCCACTTCAACTTGCCATATTCTTCACTCTATGGAAGATTCAAAAGATGCAAATATCAGACTCAGCCGTTATCTCATCAAGAGGTCCACCATCCCCCAGAAATGGGAAATCCTCAAGATTTGAACTACTACCACCAGATGCCAGGATACCAGGAGCAGGATCCGGCACAGCAACCATATTCTCACGAGTTCATCCCAGATGCATCACCATCTCTTAACAACATGGTGCTACAAGATCCTTTCTCAGGACAGACGGTGTATTACAGTCAGAATTTTAGCAGTATAGTCACCAGCTGA
- Protein Sequence
- MPNSGPAAVKCEPASDEEDNSRQLTDLFLNDTSHEVLEELAPLAPAGPAATPVCVKQEPVEHPAQSLETLVSATHTAGSLLERHIAILRSSELLSSDNFTTLQAVKEEPTSEGECPSTEQHPTSGDEQSDSSGRLEPDCTRGSPKTWRQQDMDNAIDALRNHHMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGCAKSWSEEDLRAALHALRAGTISANKASKAYGIPSSTLYKIARREGIQLAAPFNAAPVSWRRGDLQCALQAIKTGRASVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQTQPLSHQEVHHPPEMGNPQDLNYYHQMPGYQEQDPAQQPYSHEFIPDASPSLNNMVLQDPFSGQTVYYSQNFSSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698192;
- 90% Identity
- iTF_00700016;
- 80% Identity
- -