Eabb012830.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000109.1:452521-456345[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 1e-08 35.0 0.0 4 39 151 187 148 191 0.90 2 4 2.9e-11 2.6e-08 33.7 0.3 1 39 202 240 202 243 0.93 3 4 2.4e-16 2.1e-13 49.9 0.1 2 45 258 302 257 302 0.96 4 4 1e-16 9.2e-14 51.1 0.0 1 44 309 353 309 354 0.96
Sequence Information
- Coding Sequence
- ATGTCCAACTCTGGAACTGCTGCTATAAAATGTGAACTTGTCTCAGATGAAGAAGACAGCAATCGTCATTTAACTAATCTCTTCCTCAATAACACGAGTCATGAAGTGCTGGAGGACTTAGCCCCGTTAGCGCCGCCCGGGCCCGCGGCGACGCCAGTCTGCGTCAAGCAGGAGCCCGTGGAGCACCCTGCGCAGAGCTTCGAGACCTTGGAGTCTGCTGTACATACGGGATCTTTGTTGGAGAGATACATGGCGAGGACATCTGACACATCTGAAGTGCTCAACTCGGAAAACTTCACGATGCTACAAGCTATCAAGGATGAACCTTGTTTTGAAGGAGAATGCCAATCCACTGAGCAGCAGCTGACCAGCGGCGACGAGCAGAGCGACTCGAGCTGCCGACTCGAGCCCGACGGCACGCGCGGCAGCCCCAAGACATGGAGGCAGCAGGACATGGACCACGCACTCGACGCACTGCGGAATCATCACATGAGTCTCACCAAGGCGTCATCAACCTATGGTATTCCTTCAACGACGCTGTGGCAGCGCGCGCACCGGCTTGGGATCGACACGCCGAAGAAGGAAGGCTGCGCCAAGTCTTGGACCGAGGCGGATCTGCGATCTGCCCTACAAGCGCTTCGAGCTGGTGCCATTTCCGCCAACAAGGCGAGCAAGTCTTATGGTATACCAAGCAGCACACTTTACAAGATAGCTCGTCGCGAGGGTATCCGGCTGGCTGCACCGTTCAACGCGGCACCAGTGGCGTGGCGGCGCGGAGATTTGCAGCGCGCGCTCCAAGCCATCAGAACTGGACGCGCCTCCGTGCAGCGTGCCGCCACGCAGTACGGGATACCTACTGGTACCCTTTACGGTCGTTGTAAACGAGAAGGCATAGAGTTGTCTCGATCGAATCCCACACCTTGGTCTGAAGACGCAATGGGAGACGCGTTAGAAGCTGTGAGGATTGGTCAGATGTCGATTAACCAGGCTGCTATCCACTTTAACTTGCCATATTCTTCACTCTATGGAAGATTCAAAAGGTGCAAATATCAGGCTCAGCCGTTATCTCATCACGAAGTCCAAAACCTCCCGGAAATAGAAAACCATCAAGATTTGAACTACTACCATCAGATGGCAGGATACCAGCAGGAGCAGGAACCACACCAAGCATACTCTCAGGAATTCATCCCGGACGCATCACCATCTCCTAACAACACGGTGCTACAAGATCCTTTCTCAGGACAGACGGTGTATTACAGCCAGAATTTTAGCAGTATAGTCACCAGCTGA
- Protein Sequence
- MSNSGTAAIKCELVSDEEDSNRHLTNLFLNNTSHEVLEDLAPLAPPGPAATPVCVKQEPVEHPAQSFETLESAVHTGSLLERYMARTSDTSEVLNSENFTMLQAIKDEPCFEGECQSTEQQLTSGDEQSDSSCRLEPDGTRGSPKTWRQQDMDHALDALRNHHMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGCAKSWTEADLRSALQALRAGAISANKASKSYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLQRALQAIRTGRASVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGDALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQAQPLSHHEVQNLPEIENHQDLNYYHQMAGYQQEQEPHQAYSQEFIPDASPSPNNTVLQDPFSGQTVYYSQNFSSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698192;
- 90% Identity
- iTF_00698192;
- 80% Identity
- -