Dnoa004827.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dufourea novaeangliae
Gene Symbol
-
Assembly
GCA_001272555.1
Location
NW:1114860-1146523[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3.9e-05 0.0022 17.5 1.4 1 23 460 482 460 482 0.96
2 18 0.0023 0.13 11.9 1.6 1 20 488 507 488 510 0.94
3 18 1e-05 0.00058 19.3 2.2 1 23 516 538 516 538 0.98
4 18 5.7e-05 0.0031 17.0 4.4 1 21 544 564 544 566 0.95
5 18 7.6e-06 0.00042 19.7 5.6 1 23 572 594 572 594 0.99
6 18 1.7e-05 0.00097 18.6 5.3 1 23 600 622 600 622 0.97
7 18 6.6e-05 0.0037 16.8 6.9 1 23 628 650 628 650 0.96
8 18 6.5e-08 3.6e-06 26.3 2.7 1 23 656 678 656 678 0.98
9 18 4.8e-05 0.0027 17.2 6.7 1 23 684 706 684 706 0.97
10 18 1.5e-05 0.00082 18.8 5.8 1 23 712 734 712 734 0.98
11 18 3.9e-07 2.2e-05 23.8 2.9 1 23 740 762 740 762 0.98
12 18 5.9e-06 0.00033 20.1 7.8 1 23 768 790 768 790 0.98
13 18 1.9e-05 0.001 18.5 9.1 1 23 796 818 796 818 0.98
14 18 2.4e-05 0.0013 18.2 7.5 1 23 824 846 824 846 0.98
15 18 0.0012 0.065 12.9 8.8 1 21 852 872 852 874 0.94
16 18 8.9e-06 0.00049 19.5 0.4 1 23 880 902 880 902 0.98
17 18 0.021 1.2 8.9 4.5 1 23 912 934 912 934 0.98
18 18 3.4e-07 1.9e-05 24.0 1.3 1 23 940 962 940 962 0.97

Sequence Information

Coding Sequence
ATGAACAGCGAGCAGCATGCATTGCCAGCAACTACGCAGGCACAACAAGAGGATGTAAATGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAACAACTAGTCTTGGCAATGTAGGGAGTACCCCACATTCATCCGCAGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTGTTTCCTGGACCGCTACCTCAGGTCTCAGTCTATCACCATTCCCACCACAACTCCTCGCACAGGAGTGGTGGAGGTGGAGAGGCATCTTCGAAAGAGCCAGCCTCTTCATTGAATCAAGAAATGGCGTTAACTACCAGTTCGCACCATCAGTCTACACCTAcgcatcatcatcatcatacTACAGTTAGCCCTAGCAGTCATCATAGTTCTTTACAACCAAATCCACAGCAGATTCCAGTGTCTCTGCCAGGCCTTAATTTAGACGGAGCGCATATACCTGCCAGTGTCAGTCACTTACAGGCAGCACATGCACAAATGCAACAACAAATGCAAGCACAACAGCAACAGCTGCatcagcaacaacaacagccacagcagcagcagcaacaacaacagcaacaacaacccCCGCAACAGCAACAATCTCACCATCAAATGCAGAATCATCAAAATGCTCAGAATAATGGACCAACTGCACATAATCAAAACGCACAGAGAGACgaaaataaagtgaaagaTGAAGGTGGAAGTTGCACAACTGAACGTTGTAGCGACAATCAAGTTCACTGTCAAGTTCAGTGTGACCTACAGTTACAAACATCCCAAGATTTACAACAAAGTCTTatgcagcaacagcagcagcagcaacaacaacaacaacagcaacaacaacaaattGGTGTGAATATAAGTGGGAATTCTTCAACTGAAGGTGGAACTCAAAGCAATTCAGAAAAGCctgaaaaggaaaaagagcTACGTCAATTGAATATGACACAATTCCAAGTGCCAGATTTAAAACCTGGAGGGCATATGATGGATGTAAGGACAGCTGATGGTTCTGTTGTAAAAATTAGTGCTGGAAATGAACAAGATTTAGCAAAAACACTCGGTGTTGAAATGgtgcaaaatatgtataaggTCAATGTTGAAGATATTAATCAGCTTCTAGCATATCACGAAGTATTTGGAAAATTACAAAGTGAGATAGCAGCTGGTACTACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAAAATGGAACACCAATTGTACAACAAGTTCAgctaaataaatttgatattaaatcAAGTGATGGTGAAGCTACTCCTGGACCAAGTGCATCACCAGTATCGGTTGGAAGTCATGCTTGCGAAATTTGtggaaaaatttttcaattccgtTACCAACTTATTGTACATCGTCGGTATCATACAGAAAGAAAACCTTTTACTTGCCAAGTGTGCGGCAAGGCGTTCTTAAATGCAAATGATTTGACACGTCATGGTAAATGCCACTTAGGTGGATCTATGTTCACTTGTACAGTGTGTTTTCATGTTTTTGCAAACGCGCAATCTTTGGAACGTCATATGAAGCGTCACGCTACTGATAAACCATACAATTGTACAGTGTGTGGGAAAAGCTTTGCCAGAAAAGAACATTTGGATAATCATACTCGTTGTCATACTGGAGAAACACCCTATAGGTGCCAATACTGTTCCAAGACATTTACCAGAAAAGAGCACATGGTGAATCATGTTCGCAAACACACAGGTGAAACACCGCATCGATGTGATATCTGCAAAAAGAGTTTTACTCGCAAAGAACACTTTATGAACCACGTTATGTGGCACACAGGAGAAACTCCTCATCATTGCCAAGCATGTGGCAAGAAGTACACACGTAAAGAGCACCTTGCAAACCATATGCGCTCACATACCAACGATACACCATTTCGTTGTGAAATATGCGGTAAGTCGTTTACGAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACCCGAAAGGAGCATCTCTTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCGTTCCGCTGTCAGTACTGTCCAAAAGCATTTACGCGGAAGGACCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACATACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTAACGAATCATGTCCGTATCCACACCGGCGAATCACCGCACAGGTGTGAGTTTTGTCAGAGGACATTCACTAGGAAAGAACACCTTAATAATCATCTCCGTCAGCACACTGGAGACTCCTCCCATTGTTGTAACGTGTGTTCGAAACCATTTACAAGAAAGGAACATCTTGTAAATCATATGCGATGTCATACTGGCGAACGTCCATTTGTATGTACCGAATGTGGAAAAAGTTTTCCACTAAAAGGTAATTTACTTTTCCACATGCGTTCGCATAATAAAGGAAGCAACGCTGAACGACCGTTCCGTTGCGATCTGTGTCCGAAAGACTTCATGTGCAAAGGGCACTTGGTATCGCACAGACGGTCGCACTCGGACGAACGACCGCACAGCTGTCCGGATTGTGGTAAAACATTTGTCGAAAAAGGGAACATGCTGAGACACTTGAGAAAGCATGCAGCCGAAGGACCACCGACGCAAGTCAGCACACCGTCAGCCATTCCTCAATCTGGTGTTTTGCCTATCCCAGCGGCAGCGGTTTTGGTCGGGCATCCATTGGCCCCACCAGCGCCACCTGTAGTGCCGCAGCATACGGTTGTTGTACCCACTCCGCCAGGTGTATTGACCTCTTACTAA
Protein Sequence
MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATTTSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSGGGGEASSKEPASSLNQEMALTTSSHHQSTPTHHHHHTTVSPSSHHSSLQPNPQQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQMQAQQQQLHQQQQQPQQQQQQQQQQQPPQQQQSHHQMQNHQNAQNNGPTAHNQNAQRDENKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQQQQQQQQIGVNISGNSSTEGGTQSNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAQSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY