Basic Information

Insect: Lasioglossum albipes
Gene Symbol: -
Assembly: GCA_000346575.1
Location: KB640596.1:606027-620084[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.6e-05 0.0045 17.5 1.4 1 23 453 475 453 475 0.96

2 18 0.0033 0.27 11.9 1.6 1 20 481 500 481 503 0.94

3 18 1.4e-05 0.0011 19.4 1.4 1 23 509 531 509 531 0.98

4 18 8.1e-05 0.0065 17.0 4.4 1 21 537 557 537 559 0.95

5 18 1.1e-05 0.00088 19.8 5.6 1 23 565 587 565 587 0.99

6 18 2.5e-05 0.002 18.6 5.3 1 23 593 615 593 615 0.97

7 18 9.4e-05 0.0076 16.8 6.9 1 23 621 643 621 643 0.96

8 18 9.3e-08 7.4e-06 26.3 2.7 1 23 649 671 649 671 0.98

9 18 6.8e-05 0.0055 17.2 6.7 1 23 677 699 677 699 0.97

10 18 2.1e-05 0.0017 18.8 5.8 1 23 705 727 705 727 0.98

11 18 5.6e-07 4.5e-05 23.8 2.9 1 23 733 755 733 755 0.98

12 18 8.4e-06 0.00067 20.1 7.8 1 23 761 783 761 783 0.98

13 18 2.6e-05 0.0021 18.5 9.1 1 23 789 811 789 811 0.98

14 18 3.5e-05 0.0028 18.2 7.5 1 23 817 839 817 839 0.98

15 18 0.0017 0.13 12.9 8.8 1 21 845 865 845 867 0.94

16 18 1.3e-05 0.001 19.5 0.4 1 23 873 895 873 895 0.98

17 18 0.03 2.4 8.9 4.5 1 23 905 927 905 927 0.98

18 18 4.9e-07 3.9e-05 24.0 1.3 1 23 933 955 933 955 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.6e-05	0.0045	17.5	1.4	1	23	453	475	453	475	0.96
2	18	0.0033	0.27	11.9	1.6	1	20	481	500	481	503	0.94
3	18	1.4e-05	0.0011	19.4	1.4	1	23	509	531	509	531	0.98
4	18	8.1e-05	0.0065	17.0	4.4	1	21	537	557	537	559	0.95
5	18	1.1e-05	0.00088	19.8	5.6	1	23	565	587	565	587	0.99
6	18	2.5e-05	0.002	18.6	5.3	1	23	593	615	593	615	0.97
7	18	9.4e-05	0.0076	16.8	6.9	1	23	621	643	621	643	0.96
8	18	9.3e-08	7.4e-06	26.3	2.7	1	23	649	671	649	671	0.98
9	18	6.8e-05	0.0055	17.2	6.7	1	23	677	699	677	699	0.97
10	18	2.1e-05	0.0017	18.8	5.8	1	23	705	727	705	727	0.98
11	18	5.6e-07	4.5e-05	23.8	2.9	1	23	733	755	733	755	0.98
12	18	8.4e-06	0.00067	20.1	7.8	1	23	761	783	761	783	0.98
13	18	2.6e-05	0.0021	18.5	9.1	1	23	789	811	789	811	0.98
14	18	3.5e-05	0.0028	18.2	7.5	1	23	817	839	817	839	0.98
15	18	0.0017	0.13	12.9	8.8	1	21	845	865	845	867	0.94
16	18	1.3e-05	0.001	19.5	0.4	1	23	873	895	873	895	0.98
17	18	0.03	2.4	8.9	4.5	1	23	905	927	905	927	0.98
18	18	4.9e-07	3.9e-05	24.0	1.3	1	23	933	955	933	955	0.97

Sequence Information

Coding Sequence: ATGAATAGCGAGCAGCATGCGTTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAATGCGGGTCAAAGTGGTCGTCCTTCGTATCCAGGTGGTTTGGCTACAGCGGCTAGTCTTGGCAATGTAGGGAGTACCCCACATTCATCCGCAGACCTGCGTGTAGGTACAGCAGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTGACCAATCTGTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCGCACAGGAGTAGTGGAGGCGGAGAGGCGTCTTCCAAAGAGCCAGCCTCTTCGTTGAACCAAGAAATGGCGTTAACTTCCAGCTCGCACCATCAGTCGACACCTGCGCATCATCATCATCAACCTACTGTTAGCGCTAGCGGTCATCATAGCTCTTTGCAACCGAATCCTCAGCAGATTCCAGTGTCTCTGCCGGGCCTTAATTTAGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAAAACGCACAGAGGGACGACAACAAAGTGAAAGACGAGGGCGGCAGTTGCACAACAGAGCGTTGTAGCGACAATCAAGTTCACTGTCAAGTTCAATGCGATCTTCAGTTGCAAACTTCTCAAGACATACAACAGAGCCTTATGCAACAGCAACAACAGCAACAAATCGGCGTGAACATCAGTGGAAATTCCTCGTCCGAAGGCGGAACGCAGAACAATAGCGAGAAGCCTGAGAAGGAGAAGGAGTTGCGTCAACTAAACATGACGCAATTCCAAGTGCCAGATCTAAAACCAGGAGGCCATATGATGGACGTGAGAACCGCCGATGGTTCCGTCGTGAAAATCAGCGCTGGAAACGAGCAGGATCTTGCGAAAACTCTCGGCGTGGAAATGGTGCAAAATATGTACAAGGTTAACGTCGAGGACATTAATCAGCTTCTAGCGTATCACGAAGTATTCGGGAAATTACAGAGCGAAATAGCAGCTGGTACAACGTTAGTCGGAAGCACAGTTCCTACGCAAACCGTGACCACTATACAGAACGGAACGCCGATCGTCCAACAAGTTCAGTTGAACAAGTTCGACATTAAATCCAGCGATGGAGAAGCTACGCCAGGCCCAAGCGCGTCGCCCGTTTCCGTCGGAAGCCATGCCTGCGAAATCTGCGGAAAGATTTTCCAATTTCGCTACCAGCTTATCGTGCACCGTCGCTATCACACGGAACGAAAACCTTTCACTTGTCAGGTGTGCGGCAAAGCGTTCCTAAACGCGAACGATCTGACGCGTCACGGTAAATGCCATTTAGGTGGATCCATGTTCACTTGCACGGTATGCTTTCATGTGTTTGCAAACGCACCCTCGTTGGAACGTCACATGAAACGTCACGCCACCGATAAACCGTACAATTGTACAGTGTGTGGCAAAAGTTTCGCGAGGAAAGAGCATTTGGATAATCACACGCGTTGCCACACCGGAGAAACACCTTACAGATGCCAGTACTGTTCGAAAACATTTACTAGAAAAGAACATATGGTGAATCACGTTCGCAAACATACAGGCGAGACTCCGCATCGATGTGATATTTGCAAAAAGAGCTTCACCCGTAAAGAACACTTTATGAACCATGTTATGTGGCATACGGGAGAAACTCCTCATCACTGCCAAGCTTGTGGCAAAAAGTACACCCGCAAAGAACATCTTGCAAACCATATGCGCTCGCATACCAATGATACGCCGTTTCGATGCGAAATATGCGGTAAGTCGTTTACGAGAAAGGAGCATTTCACGAATCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACGTTCACCCGAAAGGAACATCTGTTGAACCACGTCCGCCAGCACACGGGTGAGTCTCCACATCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCTTTCCGCTGTCAGTACTGTCCGAAAGCATTTACGCGAAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACATACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTAACGAATCATGTTCGTATTCACACCGGCGAATCACCGCACAGGTGTGAATTTTGTCAGAGGACATTCACTAGGAAAGAACACCTTAATAATCATCTCCGGCAACATACCGGAGACTCGTCCCATTGTTGTAACGTGTGTTCGAAACCGTTCACAAGAAAGGAGCACCTTGTAAACCACATGCGATGTCACACCGGCGAGCGTCCATTCGTCTGCACGGAGTGCGGCAAGAGTTTCCCTCTGAAGGGTAACCTGCTGTTCCACATGCGTTCGCATAACAAAGGGAGCAACGCTGAGAGGCCGTTCCGTTGCGATCTATGCCCTAAAGACTTCATGTGCAAAGGTCATTTGGTGTCGCACAGACGGTCGCATTCGGACGAGCGGCCGCACAGTTGCCCGGACTGTGGAAAGACATTCGTTGAGAAGGGCAACATGTTGAGACATTTAAGGAAACACGCGGCGGAAGGACCACCGACGCAAGTCAGTACACCCTCAGCCATTCCTCAATCTGGTGTTCTGCCGATTCCGGCGGCGGCTGTTCTCTACGCGTTTCCCGTCGGCCATCCGCTGGCGCCGCCCGCACCGCCAGTAGTGCCGCAACATACGGTCGTCGTACCGACTCCACCCGGCGTATTAACCTCTTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATAASLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPAHHHHQPTVSASGHHSSLQPNPQQIPVSLPGLNLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQDIQQSLMQQQQQQQIGVNISGNSSSEGGTQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLYAFPVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00625640;
80% Identity: -