Basic Information

Insect: Nomia melanderi
Gene Symbol: -
Assembly: GCA_003710045.1
Location: NW:108237-149111[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.4e-05 0.0021 17.5 1.4 1 23 468 490 468 490 0.96

2 18 0.0021 0.12 11.9 1.6 1 20 496 515 496 518 0.94

3 18 8.5e-06 0.00052 19.4 1.4 1 23 524 546 524 546 0.98

4 18 4.9e-05 0.003 17.0 4.4 1 21 552 572 552 574 0.95

5 18 6.7e-06 0.00041 19.7 5.6 1 23 580 602 580 602 0.99

6 18 1.5e-05 0.00093 18.6 5.3 1 23 608 630 608 630 0.97

7 18 5.8e-05 0.0035 16.8 6.9 1 23 636 658 636 658 0.96

8 18 5.7e-08 3.4e-06 26.3 2.7 1 23 664 686 664 686 0.98

9 18 4.2e-05 0.0025 17.2 6.7 1 23 692 714 692 714 0.97

10 18 1.3e-05 0.00079 18.8 5.8 1 23 720 742 720 742 0.98

11 18 3.5e-07 2.1e-05 23.8 2.9 1 23 748 770 748 770 0.98

12 18 5.1e-06 0.00031 20.1 7.8 1 23 776 798 776 798 0.98

13 18 1.6e-05 0.00098 18.5 9.1 1 23 804 826 804 826 0.98

14 18 2.1e-05 0.0013 18.2 7.5 1 23 832 854 832 854 0.98

15 18 0.001 0.062 12.9 8.8 1 21 860 880 860 882 0.94

16 18 7.8e-06 0.00047 19.5 0.4 1 23 888 910 888 910 0.98

17 18 0.019 1.1 8.9 4.5 1 23 920 942 920 942 0.98

18 18 3e-07 1.8e-05 24.0 1.3 1 23 948 970 948 970 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.4e-05	0.0021	17.5	1.4	1	23	468	490	468	490	0.96
2	18	0.0021	0.12	11.9	1.6	1	20	496	515	496	518	0.94
3	18	8.5e-06	0.00052	19.4	1.4	1	23	524	546	524	546	0.98
4	18	4.9e-05	0.003	17.0	4.4	1	21	552	572	552	574	0.95
5	18	6.7e-06	0.00041	19.7	5.6	1	23	580	602	580	602	0.99
6	18	1.5e-05	0.00093	18.6	5.3	1	23	608	630	608	630	0.97
7	18	5.8e-05	0.0035	16.8	6.9	1	23	636	658	636	658	0.96
8	18	5.7e-08	3.4e-06	26.3	2.7	1	23	664	686	664	686	0.98
9	18	4.2e-05	0.0025	17.2	6.7	1	23	692	714	692	714	0.97
10	18	1.3e-05	0.00079	18.8	5.8	1	23	720	742	720	742	0.98
11	18	3.5e-07	2.1e-05	23.8	2.9	1	23	748	770	748	770	0.98
12	18	5.1e-06	0.00031	20.1	7.8	1	23	776	798	776	798	0.98
13	18	1.6e-05	0.00098	18.5	9.1	1	23	804	826	804	826	0.98
14	18	2.1e-05	0.0013	18.2	7.5	1	23	832	854	832	854	0.98
15	18	0.001	0.062	12.9	8.8	1	21	860	880	860	882	0.94
16	18	7.8e-06	0.00047	19.5	0.4	1	23	888	910	888	910	0.98
17	18	0.019	1.1	8.9	4.5	1	23	920	942	920	942	0.98
18	18	3e-07	1.8e-05	24.0	1.3	1	23	948	970	948	970	0.97

Sequence Information

Coding Sequence: ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGagGATGTAAATGCGGGTCAAAGTGGTCGTCCTTCATATCCAGGTGGTTTGGCTACAGCAACTAGTCTTGGCAATGTAGGGAGTACCCCACATTCATCCGCAGACCTGCGTGTAGGTACAGCAGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACGAATCTGTTTCCTGGACCGCTACCTCAGGTCTCAGTCTATCACCATTCCCACCACAACTCCTCACACAGGAGTAGTGGAAGTGGAGAGACATCTTCCAAAGATCCACCCTCTTCATTGAACCAAGAAATGGCGTTAACTTCCAGCTCGCACCATCAGTCAACACCTGCGCATCATCATCACCAACCTACAGTTAGCACTAGCAGTCATCATAGTTCTTTACAACCAAATCCTCAGCAGATTCCAGTGTCTCTGCCAGGCCTTAATTTAGACGGAGCGCATATACCTGCTAGTGTCAGTCATTTGCAGGCAGCACATGCACAAATGCAACAACAAATACAGGCACAACAGCAGCAGTTGCatcagcaacaacaacagccgcagcagcagcaacaacaaccacaacagcaacaacagtCTCACCATCAAATGCAAAATCATCAAAATGCTCAGAATAATGGTCCAACTGCACATAATCAAAACGCACAGAGAGACGATAACAAAGTGAAAGATGAAGGTGGAAGTTGCACAACTGAACGTTGTAGCGACAATCAAGTTCACTGTCAAGTTCAATGTGACCTTCAGTTACAAACATCTCAAGATATACAACAAAGCCTTatgcagcaacaacaacaacagcaacagcagcagcaacaacaacagcagcagcagcagcaacaacaacaacaacaacaacaacaacaacaaattGGCGTAAATATAAGTGGAAATTCTTCAACCGAAGGTGGAACTCAAAGTAATGCAGAAAAGcctgaaaaagaaaaggagctACGTCAACTAAACATGACTCAATTTCAAGTGCCAGATTTGAAACCAGGGGGTCATATGATGGATGTAAGAACAGCTGATGGCTCTGTCGTAAAAATTAGTGCTGGAAATGAACAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTATAAGGTTAATGTTGAAGATATTAATCAGCTTCTAGCATATCACGAAGTATTTGGAAAATTGCAGAGTGAAATAGCAGCTGGTACCACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAGAATGGAACACCAATTGTACAACaggtacaattaaataaatttgacatTAAATCAAGTGATGGAGAAGCTACTCCAGGACCAAGCGCATCACCTGTGTCTGTTGGAAGTCATGCCTGCGAAATATGTGGAAAAATTTTTCAGTTCCGCTACCAACTTATTGTACACCGTCGTTATCATACAGAAAGAAAGCCTTTTACGTGTCAGGTGTGTGGCAAGGCatttttaaatgcaaatgatttgacacgtCATGGTAAATGTCACTTAGGTGGATCTATGTTCACTTGTACAGTGTGCTTTCATGTGTTTGCAAATGCACCATCGTTGGAACGTCATATGAAGCGTCATGCTACTGATAAACCATATAATTGTACCGTATGTGGGAAAAGTTTTGCAAGAAAGGAACATTTGGATAATCATACACGTTGCCACACTGGAGAAACACCGTACAGATGCCAATATTGTTCAAAAACATTTACTAGAAAGGAGCATATGGTAAATCATGTTCGCAAACACACTGGTGAAACTCCGCATCGATGTGATATTTGCAAAAAGAGCTTTACTCGTAAAGAACATTTCATGAATCATGTTATGTGGCACACGGGAGAAACTCCTCACCATTGCCAAGCCTGCGGCAAGAAGTACACACGTAAAGAACATCTTGCGAACCATATGCGTTCACATACCAATGATACGCCATTTCGTTGTGAAATATGCGGTAAGTCGTTCACGAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACTCGAAAGGAGCATCTTCTGAACCACGTCCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCGTTCCGCTGTCAATACTGTCCGAAAGCATTTACGCGAAAGGATCATCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACATACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTAACGAATCATGTCCGTATCCACACCGGCGAATCACCGCACAGGTGTGAATTTTGTCAAAGAACATTCACTAGGAAAGAACACCTTAATAATCATCTCCGTCAACATACCGGAGATTCTTCGCATTGTTGTAACGTGTGTTCAAAGCCATTTACAAGAAAGGAACACCTTGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTTGTATGTACCGAATGTGGCAAGAGTTTCCCATTGAAGGGTAACCTGCTATTCCATATGCGTTCGCATAACAAAGGTAGTAACGCTGAAAGACCGTTCCGTTGCGATCTTTGTCCTAAGGACTTCATGTGCAAAGGACATTTGGTGTCGCACAGACGATCCCATTCGGACGAACGACCACACAGTTGCCCAGATTGTGGAAAAACTTTTGTGGAAAAGGGCAATATGTTGAGACACTTGAGAAAGCACGCAGCAGAAGGACCACCGACGCAAGTCAGCACGCCATCAGCCATTCCTCAATCTGGTGTTTTGCCAATTCCGGCGGCAGCAGTTTTGGTTGGGCATCCATTGGCACCGCCAGCGCCTCCGGTAGTGCCGCAACATACAGTCGTTGTACCAACTCCACCCGGTGTACTAACCTCTTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGSGETSSKDPPSSLNQEMALTSSSHHQSTPAHHHHQPTVSTSSHHSSLQPNPQQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQIQAQQQQLHQQQQQPQQQQQQPQQQQQSHHQMQNHQNAQNNGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQDIQQSLMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQIGVNISGNSSTEGGTQSNAEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00625640;
80% Identity: -