Basic Information

Insect: Perdita meconis
Gene Symbol: -
Assembly: GCA_030770465.2
Location: JASKOS020000001.1:13927781-13953273[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.3e-05 0.0092 17.5 1.4 1 23 457 479 457 479 0.96

2 18 0.0032 0.55 11.9 1.6 1 20 485 504 485 507 0.94

3 18 1.3e-05 0.0023 19.4 1.4 1 23 513 535 513 535 0.98

4 18 7.7e-05 0.013 17.0 4.4 1 21 541 561 541 563 0.95

5 18 1e-05 0.0018 19.8 5.6 1 23 569 591 569 591 0.99

6 18 2.4e-05 0.0041 18.6 5.3 1 23 597 619 597 619 0.97

7 18 9e-05 0.016 16.8 6.9 1 23 625 647 625 647 0.96

8 18 8.8e-08 1.5e-05 26.3 2.7 1 23 653 675 653 675 0.98

9 18 6.5e-05 0.011 17.2 6.7 1 23 681 703 681 703 0.97

10 18 2e-05 0.0035 18.8 5.8 1 23 709 731 709 731 0.98

11 18 5.4e-07 9.3e-05 23.8 2.9 1 23 737 759 737 759 0.98

12 18 8e-06 0.0014 20.1 7.8 1 23 765 787 765 787 0.98

13 18 2.5e-05 0.0044 18.5 9.1 1 23 793 815 793 815 0.98

14 18 3.3e-05 0.0057 18.2 7.5 1 23 821 843 821 843 0.98

15 18 0.0016 0.27 12.9 8.8 1 21 849 869 849 871 0.94

16 18 1.2e-05 0.0021 19.5 0.4 1 23 877 899 877 899 0.98

17 18 0.029 5 8.9 4.5 1 23 909 931 909 931 0.98

18 18 4.7e-07 8.1e-05 24.0 1.3 1 23 937 959 937 959 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.3e-05	0.0092	17.5	1.4	1	23	457	479	457	479	0.96
2	18	0.0032	0.55	11.9	1.6	1	20	485	504	485	507	0.94
3	18	1.3e-05	0.0023	19.4	1.4	1	23	513	535	513	535	0.98
4	18	7.7e-05	0.013	17.0	4.4	1	21	541	561	541	563	0.95
5	18	1e-05	0.0018	19.8	5.6	1	23	569	591	569	591	0.99
6	18	2.4e-05	0.0041	18.6	5.3	1	23	597	619	597	619	0.97
7	18	9e-05	0.016	16.8	6.9	1	23	625	647	625	647	0.96
8	18	8.8e-08	1.5e-05	26.3	2.7	1	23	653	675	653	675	0.98
9	18	6.5e-05	0.011	17.2	6.7	1	23	681	703	681	703	0.97
10	18	2e-05	0.0035	18.8	5.8	1	23	709	731	709	731	0.98
11	18	5.4e-07	9.3e-05	23.8	2.9	1	23	737	759	737	759	0.98
12	18	8e-06	0.0014	20.1	7.8	1	23	765	787	765	787	0.98
13	18	2.5e-05	0.0044	18.5	9.1	1	23	793	815	793	815	0.98
14	18	3.3e-05	0.0057	18.2	7.5	1	23	821	843	821	843	0.98
15	18	0.0016	0.27	12.9	8.8	1	21	849	869	849	871	0.94
16	18	1.2e-05	0.0021	19.5	0.4	1	23	877	899	877	899	0.98
17	18	0.029	5	8.9	4.5	1	23	909	931	909	931	0.98
18	18	4.7e-07	8.1e-05	24.0	1.3	1	23	937	959	937	959	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCGTTGCCAGCGACTACGCAGGCACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCGTACCCAGGTGGTTTGACTGCTGCAACCAGTCTTGGCAATGTAGCGAGTACCCCGCATTCGTCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTATTTCCCGGACCGCTACCTCAGGTCTCGGTCTATCACCATTCCCACCACAACTCCTCGCACAGGAGTAGTGGAAGTGGAGAGGCGTCTTCCAAAGAGCCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACTTCCAGTTCGCACCATCAGTCAACATCAAcgcatcatcatcatcatcagcCTTCAGTTAGCAGTAGCAGTCATCATAGCTCGTTACAACCGAATCCACAGCAGATTCCAGTTTCGCTGCCAGGCCTTAGTTTAGACGGAGCACACATACCTGCCAGCGTTAGTCATTTGCAGGCGGCACATGCACAAATGCAACAACAAATGCAAGCGCAACAGCAGCAGCTGCACCAGCAGCAAccgcagcagcagcaacagccaCCGCAGCCGCAACAGCAGCAACAGTCTCACCATCCGATGCAGAACCATCAGAACGCTCAGAATAATGGACCAACTGCGCATAATCAAAACGCACAGCGAGACGATAATAAAGTGAAGGACGAAGGCGGAAGTTGCACAACTGAACGTTGTAGTGATAATCAGGTTCACTGTCAGGTTCAGTGCGACCTCCAGTTAGAAACGTCTCAAGATTTACAACAAAGCCTTatgcaacagcagcagcagcaacagcaacaacaacaacagcagcagcaacagcagcaaaTCGGCGTGAACATAACCGGGAATTCCTCGACCGAAGGTGGCAGCCAGAACAATTCGGTGAAGTCGGAGAAGGACAAGGAGCTACGTCAGCTTAACATGACGCAATTCCAAGTGCCCGATCTGAAACCAGGTGGTCATATGATGGATGTGAGAACAGCCGACGGTTCGGTTGTCAAAATCAGCGCTGGGAACGAACAGGATCTAGCCAAAACTCTTGGCGTTGAAATGGtgcaaaatatgtataagGTGAATGTCGAAGATATAAATCAACTTCTAGCATATCATGAAGTATTCGGAAAGTTGCAAAGTGATATAGCCGCCGGTACAAGCTTAGTTGGAAGCACAGTTCCTACCCAAACAGTTACCACTATACAGAACGGAACGCCGATTGTACAGcaagtacaattaaataaattcgacATTAAATCGAGCGACGGCGAAGCCACGCCAGGACCAAGCGCATCGCCGGTGTCGGTTGGAAGCCACGCTTGCGAAATATGcgggaaaatatttcaatttcgctATCAGCTTATTGTCCATCGTCGATATCACACGGAACGAAAGCCTTTCACATGTCAGGTGTGTGGCAaggcatttttaaatgcaaatgATTTGACGCGTCATGGAAAATGCCACTTAGGCGGATCCATGTTCACGTGTACAGTGTGTTTTCACGTGTTTGCCAATGCACCGTCGTTAGAACGTCATATGAAGCGACATGCCACCGATAAACCGTACAATTGCACCGTTTGTGGGAAAAGTTTCGCGAGAAAAGAACATTTGGATAATCATACTCGTTGTCATACTGGAGAAACGCCTTACagGTGTCAGTACTGTTCGAAGACATTTACGAGAAAAGAACACATGGTAAATCACGTTCGCAAGCACACGGGCGAAACGCCGCATCGATGTGATATTTGCAAAAAGAGTTTCACTCGTAAAGAGCACTTTATGAACCACGTTATGTGGCATACAGGAGAAACTCCGCACCACTGTCAAGCCTGTGGCAAGAAGTACACGCGTAAAGAGCATCTTGCGAATCATATGCGTTCGCACACCAATGATACACCGTTCCGCTGTGAAATATGTGGTAAGTCGTTTACGAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTTTTGAACCACGTCCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCTTTCCGCTGTCAATACTGTCCAAAAGCATTTACGCGGAAGGATCACTTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACATACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACCGGCGAATCACCGCACAGGTGTGAGTTTTGTCAGAGGACGTTCACTAGGAAAGAACACCTCAATAATCATCTCCGTCAACATACTGGAGATTCATCGCACTGTTGTAACGTGTGCTCGAAACCGTTTACAAGAAAGGAGCATCTTGTAAATCACATGCGATGTCATACCGGTGAACGTCCATTCGTATGCACAGAATGTGGCAAAAGTTTCCCGTTGAAGGGCAATCTATTGTTCCATATGCGTTCGCACAATAAAGGCAGCAACGCCGAAAGGCCGTTCCGTTGCGACCTCTGTCCTAAAGACTTCATGTGCAAAGGACACTTAGTGTCGCACAGACGATCACATTCGGACGAACGACCGCACAGCTGCCCGGACTGTGGTAAAACGTTCGTCGAGAAAGGGAACATGCTGAGACATTTGAGGAAACACGCGACGGAAGGACCGCCGACGCAAGTCAGCACGCCCTCGGCGATTCCGCAGGCCGGCGTTCTGCCGATACCCGCGGCGGCGGTTTTGGTTGGGCATCCGTTGGCGCCGCCTGCGCCGCCGGTCGTCGTGCCGCAGCACACGGTCGTCGTGCCCACGCCGCCCGGCGTCTTGACCTCTTATTAA
Protein Sequence: MNSEQHALPATTQAQEDVNAGQSGRPSYPGGLTAATSLGNVASTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGSGEASSKEPASSLNQEMALTSSSHHQSTSTHHHHHQPSVSSSSHHSSLQPNPQQIPVSLPGLSLDGAHIPASVSHLQAAHAQMQQQMQAQQQQLHQQQPQQQQQPPQPQQQQQSHHPMQNHQNAQNNGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLETSQDLQQSLMQQQQQQQQQQQQQQQQQQIGVNITGNSSTEGGSQNNSVKSEKDKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSDIAAGTSLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHATEGPPTQVSTPSAIPQAGVLPIPAAAVLVGHPLAPPAPPVVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00625640;
80% Identity: -