Basic Information

Insect: Apis cerana
Gene Symbol: -
Assembly: GCA_029169275.1
Location: CM054911.1:6831800-6844944[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.4e-05 0.0061 17.5 1.4 1 23 443 465 443 465 0.96

2 18 0.0032 0.37 11.9 1.6 1 20 471 490 471 493 0.94

3 18 1.3e-05 0.0015 19.4 1.4 1 23 499 521 499 521 0.98

4 18 7.8e-05 0.0088 17.0 4.4 1 21 527 547 527 549 0.95

5 18 1.1e-05 0.0012 19.8 5.6 1 23 555 577 555 577 0.99

6 18 2.4e-05 0.0027 18.6 5.3 1 23 583 605 583 605 0.97

7 18 9.1e-05 0.01 16.8 6.9 1 23 611 633 611 633 0.96

8 18 9e-08 1e-05 26.3 2.7 1 23 639 661 639 661 0.98

9 18 6.6e-05 0.0075 17.3 6.7 1 23 667 689 667 689 0.97

10 18 2.1e-05 0.0023 18.9 5.8 1 23 695 717 695 717 0.98

11 18 5.5e-07 6.2e-05 23.8 2.9 1 23 723 745 723 745 0.98

12 18 8.1e-06 0.00092 20.1 7.8 1 23 751 773 751 773 0.98

13 18 2.6e-05 0.0029 18.6 9.1 1 23 779 801 779 801 0.98

14 18 3.4e-05 0.0038 18.2 7.5 1 23 807 829 807 829 0.98

15 18 0.0016 0.18 12.9 8.8 1 21 835 855 835 857 0.94

16 18 1.2e-05 0.0014 19.6 0.4 1 23 863 885 863 885 0.98

17 18 0.029 3.3 8.9 4.5 1 23 895 917 895 917 0.98

18 18 4.7e-07 5.4e-05 24.0 1.3 1 23 923 945 923 945 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.4e-05	0.0061	17.5	1.4	1	23	443	465	443	465	0.96
2	18	0.0032	0.37	11.9	1.6	1	20	471	490	471	493	0.94
3	18	1.3e-05	0.0015	19.4	1.4	1	23	499	521	499	521	0.98
4	18	7.8e-05	0.0088	17.0	4.4	1	21	527	547	527	549	0.95
5	18	1.1e-05	0.0012	19.8	5.6	1	23	555	577	555	577	0.99
6	18	2.4e-05	0.0027	18.6	5.3	1	23	583	605	583	605	0.97
7	18	9.1e-05	0.01	16.8	6.9	1	23	611	633	611	633	0.96
8	18	9e-08	1e-05	26.3	2.7	1	23	639	661	639	661	0.98
9	18	6.6e-05	0.0075	17.3	6.7	1	23	667	689	667	689	0.97
10	18	2.1e-05	0.0023	18.9	5.8	1	23	695	717	695	717	0.98
11	18	5.5e-07	6.2e-05	23.8	2.9	1	23	723	745	723	745	0.98
12	18	8.1e-06	0.00092	20.1	7.8	1	23	751	773	751	773	0.98
13	18	2.6e-05	0.0029	18.6	9.1	1	23	779	801	779	801	0.98
14	18	3.4e-05	0.0038	18.2	7.5	1	23	807	829	807	829	0.98
15	18	0.0016	0.18	12.9	8.8	1	21	835	855	835	857	0.94
16	18	1.2e-05	0.0014	19.6	0.4	1	23	863	885	863	885	0.98
17	18	0.029	3.3	8.9	4.5	1	23	895	917	895	917	0.98
18	18	4.7e-07	5.4e-05	24.0	1.3	1	23	923	945	923	945	0.97

Sequence Information

Coding Sequence: atgaatagtgAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGagGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCTGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCAGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAAGTGGAGAGGCATCTTCCAAAGAACCAACCTCTTCATTGAATCAAGAAATGGCGTTGACTTCCAATTCGCATCATCAGTCAACACCTAcacatcatcatcatcaatcTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATCCACAGcaGATACCAGTTTCTCTACCAGGCCTTAATTTAGACGGAGCACATATACCTGCCAGTGTCAGTCATTTACAGGCAGCACATGCACAAATGCAACAACAAATGCAGGCAGCCCAACAACAACAGCTGCATCAGCAGCAACAAcctcaacaacaacaacagcaacagcaaTCTCATCATCAAATacaaaatcatcaaaatgCTCAGAATAGTGGACCAACTGCACATAATCAAAACGCACAGAGAGATGATAATAAAGTGAAAGATGAAGGTGGAAGTTGCACAACTGAACGTTGCAGTGATAATCAAGTTCACTGTCAAGTTCAATGTGATCTCCAATTACAAACGTCTCAAGATTTGCAACAAAGCCTTatgcaacaacaacagcaacagcaacaaATTGGTGTGAATATAAGTGGAAATTCATCAAGTGAAGGTGGAAGTCAAAATAATACAGAAAAGcctgagaaagaaaaagagctaCGTCAATTAAACATGACGCAatTCCAAGTGCCAGATTTAAAACCAGGAGGTCATATGATGGATGTAAGAACAGCTGATGGTTCAGTTGTAAAAATTAGTGCTGGAAATGAACAGGATTTAGCAAAAACGCTTGGTGTTGAAATGGTGCAAAATATGTATAAgGTAAATGTTGAGGATATTAATCAACTTTTAGCATATCATGAAGTATTTGGGAAACTACAAAGTGAAATAGCAGCCGGTACAACCTTAGTTGGAAGTACAGTTCCTACCCAAACAGTTACCACTATACAAAATGGAACTCCAATTGTGCAACAAgttcaattaaataagttCGATATTAAATCAAGTGATGGTGAAGCTACACCAGGACCAAGCGCTTCACCTGTATCAGTTGGGAGTCATGCATGTGAAAtatgtggaaaaatttttcaatttcgctATCAACTTATTGTTCATCGTCGATATCATACAGAAAGGAAACCTTTTACTTGTCaggtGTGTGGGAAAGCctttttaaatgcaaatgatTTAACACGACATGGAAAGTGTCACTTAGGTGGATCTATGTTTACTTGTACAGTTTGTTTTCATGTGTTTGCAAATGCACCATCTTTGGAACGTCACATGAAACGACATGCTACCGATAAACCGTATAATTGTACCGTATGTGGAAAAAGTTTTGCAAGAAAAGAACATTTAGATAATCATACACGTTGTCATACTGGAGAAACACCTTAcagatgccAATATTGTTCAAAAACATTTACTAGAAAAGAACATATGGTAAATCATGTTCGTAAACATACGGGTGAAACTCCTCATCGATGTGACATTTGTAAAAAGAGTTTTACTCGTAAAGAACATTTTATGAATCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGTCAAGCTTGTGGcaaaaaatatacacgtaAAGAACATCTCGCAAATCATATGCGTTCACATACCAATGATACACCATTTCGCTGTGAAATATGcgGTAAGTCGTTTACGAGAAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACACGAAAGGAGCATCTTTTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCTTTCCGCTGTCAGTACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACATCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCATACTGGTGAATCACCACATAGGTGTGAATTCTGTCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACTGGAGATTCATCGCACTGTTGCAATGTATGCTCGAAACCATTTACAAGAAAGGAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCGTTTGTATGCACAGAATGTGGCAAAAGTTTCCCCTTAAAGGGTAATTTACTTTTCCATATGCGTTCGCACAATAAAGGCAGTAATGCCGAGAGGCCATTTCGTTGCGATCTTTGCCCAAAAGACTTTATGTGCAAAGGGCATTTAGTATCTCATAGACGATCGCATTCGGATGAACGACCGCATAGCTGTCCAGATTGCGGAAAAACATTTGTTGAAAAGGGCAATATGCTTAGACATTTGAGAAAACACGCGGCAGAAGGACCACCAACTCAAGTTAGTACTCCCTCTGCAATTCCTCAATCTGGTGTTTTGCCGATTCCGGCAGCAGCAGTTCTTGTCGGCCATCCTTTGGCGCCACCCGCACCACCTGTAGTACCGCAACACACTGTAGTTGTGCCTACTCCACCAGGTGTATTGACCTCCTATTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGSGEASSKEPTSSLNQEMALTSNSHHQSTPTHHHHQSSVSSSSHHSSLQPNPQQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQMQAAQQQQLHQQQQPQQQQQQQQSHHQIQNHQNAQNSGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQIGVNISGNSSSEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00625640;
80% Identity: -