Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052176.1:3574319-3584601[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.8e-05 0.0039 17.5 1.4 1 23 458 480 458 480 0.96

2 18 0.0029 0.23 11.9 1.6 1 20 486 505 486 508 0.94

3 18 1.2e-05 0.00097 19.4 1.4 1 23 514 536 514 536 0.98

4 18 6.9e-05 0.0057 17.0 4.4 1 21 542 562 542 564 0.95

5 18 9.3e-06 0.00076 19.8 5.6 1 23 570 592 570 592 0.99

6 18 2.1e-05 0.0017 18.6 5.3 1 23 598 620 598 620 0.97

7 18 8.1e-05 0.0066 16.8 6.9 1 23 626 648 626 648 0.96

8 18 7.9e-08 6.5e-06 26.3 2.7 1 23 654 676 654 676 0.98

9 18 5.9e-05 0.0048 17.2 6.7 1 23 682 704 682 704 0.97

10 18 1.8e-05 0.0015 18.8 5.8 1 23 710 732 710 732 0.98

11 18 4.8e-07 3.9e-05 23.8 2.9 1 23 738 760 738 760 0.98

12 18 7.2e-06 0.00059 20.1 7.8 1 23 766 788 766 788 0.98

13 18 2.3e-05 0.0019 18.5 9.1 1 23 794 816 794 816 0.98

14 18 3e-05 0.0024 18.2 7.5 1 23 822 844 822 844 0.98

15 18 0.0014 0.12 12.9 8.8 1 21 850 870 850 872 0.94

16 18 1.1e-05 0.00089 19.5 0.4 1 23 878 900 878 900 0.98

17 18 0.026 2.1 8.9 4.5 1 23 910 932 910 932 0.98

18 18 4.2e-07 3.4e-05 24.0 1.3 1 23 938 960 938 960 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.8e-05	0.0039	17.5	1.4	1	23	458	480	458	480	0.96
2	18	0.0029	0.23	11.9	1.6	1	20	486	505	486	508	0.94
3	18	1.2e-05	0.00097	19.4	1.4	1	23	514	536	514	536	0.98
4	18	6.9e-05	0.0057	17.0	4.4	1	21	542	562	542	564	0.95
5	18	9.3e-06	0.00076	19.8	5.6	1	23	570	592	570	592	0.99
6	18	2.1e-05	0.0017	18.6	5.3	1	23	598	620	598	620	0.97
7	18	8.1e-05	0.0066	16.8	6.9	1	23	626	648	626	648	0.96
8	18	7.9e-08	6.5e-06	26.3	2.7	1	23	654	676	654	676	0.98
9	18	5.9e-05	0.0048	17.2	6.7	1	23	682	704	682	704	0.97
10	18	1.8e-05	0.0015	18.8	5.8	1	23	710	732	710	732	0.98
11	18	4.8e-07	3.9e-05	23.8	2.9	1	23	738	760	738	760	0.98
12	18	7.2e-06	0.00059	20.1	7.8	1	23	766	788	766	788	0.98
13	18	2.3e-05	0.0019	18.5	9.1	1	23	794	816	794	816	0.98
14	18	3e-05	0.0024	18.2	7.5	1	23	822	844	822	844	0.98
15	18	0.0014	0.12	12.9	8.8	1	21	850	870	850	872	0.94
16	18	1.1e-05	0.00089	19.5	0.4	1	23	878	900	878	900	0.98
17	18	0.026	2.1	8.9	4.5	1	23	910	932	910	932	0.98
18	18	4.2e-07	3.4e-05	24.0	1.3	1	23	938	960	938	960	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAATGCGGGTCAAAGTGGTCGTCCTTCATATCCAGGTGGTTTGGCTACAGCAACTAGTCTTGGCAATGTAGGGAGTACCCCACATTCATCCGCAGACCTGCGTGTAGGTACAGCAGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACGAATCTGTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCACACAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAACCAAGAAATGGCGTTAACTTCCAGCTCACACCATCAGTCAACACCTACGCATCATCATCATCAACCTACAGTTAGCACTAGCAGTCATCATAGTTCTTTGCAACCAAATCCTCAGCAGATTCCAGTGTCCCTGCCAGGCCTTAATTTAGACGGAGCGCATATACCTACcagtgtcagtcatttacaggcagcacatgcacaaatgcaacaacaaatacaggcacaacagcagcagctgcatcagcaacaacaacaacaacaacagccgcagcagcagcaacaacaacaacctcaacagcaacctcaacaacaacaatctcatcatcaaatgcaaaatcatcaaaatgctcagaacaatggaccaactGCACATAATCAAAACGCACAGAGGGACGATAATAAAGTGAAAGATGAAGGTGGAAGTTGCACAACCGAACGTTGTAGCGACAATCAAGTTCACTGTCAAGTTCAATGTGACCTTCAGTTACAaacatctcaagatatacaacaaagccttatgcagcagcaacagcagcagcaacagcaacagcaacaaATTGGGGTCAACATAAGTGGAAATTCTTCCTCTGAAGGTGGAACCCAAAACAATACTGAGAAGCCTGAGAAAGAAAAGGAGTTGCGTCAACTAAACATGACACAATTTCAAGTGCCAGATTTAAAACCAGGAGGCCATATGATGGATGTAAGAACAGCCGATGGTTCTGTTGTAAAAATTAGTGCTGGAAATGAACAAGATTTAGCAAAAACTCTTGGCGTTGAAATGGTGCAAAATATGTATAAGGTTAATGTTGAAGATATTAATCAGCTTCTAGCATATCACGAAGTATTTGGAAAATTACAGAGTGAAATAGCAGCTGGTACCACCTTAGTTGGAAGTACAGTTCCTACACAAACAGTTACCACTATACAGAATGGAACACCAATTGTGCAACAAGTTCAGTTAAATAAGTTTGACATTAAATCAAGTGATGGCGAAGCTACACCAGGACCAAGTGCATCGCCTGTGTCAGTTGGTAGTCACGCCTGTGAAATATGTGGAAAAATTTTTCAATTTCGTTACCAACTTATCGTACATCGTCGTTATCATACGGAAAGAAAACCTTTCACTTGTCAGGTGTGTGGCAAAGCATTTCTAAATGCGAATGATTTGACACGTCATGGTAAATGCCATTTAGGTGGATCTATGTTCACTTGTACAGTATGTTTCCATGTGTTTGCAAATGCACCATCGTTGGAACGTCATATGAAACGTCACGCTACTGATAAACCATACAATTGTACTGTATGTGGTAAAAGTTTTGCAAGAAAGGAACATTTGGATAATCATACACGTTGTCACACTGGAGAAACACCTTACAGATGTCAGTACTGTTCAAAAACATTTACCAGGAAAGAACATATGGTAAATCACGTTCGTAAACATACAGGTGAAACTCCGCATCGATGTGATATTTGCAAAAAGAGCTTTACTCGTAAAGAACACTTTATGAACCACGTTATGTGGCACACGGGAGAAACTCCTCATCACTGCCAAGCTTGTGGCAAAAAGTACACACGTAAAGAACATCTTGCAAACCATATGCGCTCACATACCAATGATACACCATTTCGTTGTGAAATATGCGGTAAGTCGTTCACAAGAAAGGAGCATTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGCGATTTCTGCTCGAAGACGTTCACCCGAAAGGAGCATCTCCTGAACCACGTCCGTCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCTTTCCGCTGTCAGTACTGTCCAAAAGCATTTACGCGAAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACATACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTAACGAATCATGTTCGTATTCACACTGGCGAATCACCGCATAGGTGTGAATTTTGTCAGAGGACATTCACTAGGAAAGAACATCTCAATAATCATCTCCGACAACATACCGGAGACTCCTCGCATTGTTGTAACGTGTGTTCGAAACCGTTTACAAGAAAGGAACATCTTGTGAATCATATGCGATGTCATACCGGCGAACGCCCATTTGTATGCACTGAATGTGGCAAGAGTTTCCCGCTAAAGGGTAACTTGCTGTTTCACATGCGTTCTCATAATAAAGGAAGTAACGCTGAAAGACCGTTCCGTTGCGACCTCTGTCCTAAAGACTTCATGTGCAAAGGACATTTGGTGTCGCACAGACGATCCCATTCGGACGAACGACCACACAGTTGCCCGGACTGTGGAAAAACTTTCGTGGAGAAGGGCAATATGTTGAGACATTTAAGGAAACACGCAGCAGAAGGACCACCAACGCAAGTCAGTACACCGTCAGCCATTCCTCAATCTGGTGTTTTGCCGATCCCGGCGGCAGCAGTTTTGGTCGGCCATCCGCTGGCGCCACCTGCACCACCGGTAGTGCCGCAACATACGGTCGTCGTACCTACCCCACCTGGTGTATTAACCTCTTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPTVSTSSHHSSLQPNPQQIPVSLPGLNLDGAHIPTSVSHLQAAHAQMQQQIQAQQQQLHQQQQQQQQPQQQQQQQPQQQPQQQQSHHQMQNHQNAQNNGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQDIQQSLMQQQQQQQQQQQQIGVNISGNSSSEGGTQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00625640;
80% Identity: -