Dsuz005489.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila suzukii
Gene Symbol
RREB1
Assembly
GCA_013340165.1
Location
WWNF01000004.1:9902058-9912433[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.032 2.2 8.8 0.8 1 21 239 259 239 261 0.93
2 12 0.0003 0.02 15.2 0.2 1 23 271 293 271 293 0.98
3 12 7.2e-05 0.0049 17.1 7.3 1 23 299 321 299 321 0.98
4 12 1.9 1.3e+02 3.2 3.7 2 19 539 556 539 558 0.97
5 12 0.0078 0.53 10.7 0.1 1 23 696 718 696 718 0.97
6 12 4e-05 0.0027 17.9 1.8 1 23 728 750 728 750 0.99
7 12 0.00073 0.05 13.9 2.0 1 23 756 779 756 779 0.97
8 12 0.0026 0.18 12.2 2.0 1 23 1053 1076 1053 1076 0.95
9 12 7.6e-05 0.0052 17.0 0.3 2 23 1441 1462 1440 1462 0.97
10 12 0.13 8.7 6.9 6.3 1 23 1468 1491 1468 1491 0.97
11 12 0.0075 0.51 10.8 0.5 3 23 1699 1719 1697 1719 0.96
12 12 0.0012 0.084 13.2 4.8 1 23 1725 1747 1725 1747 0.99

Sequence Information

Coding Sequence
ATGCTCGCcgcacagcaacagcagcagcagcagcacaacaGCACAGGTGAGGCGGAAATGGAGCGCCAGCGACGGGACTCCACCACCTCGGAGTCCTCCCTGGAGCACCTGGACTTGGGTCGCACGCCCAAGAAGCTGGCCGGAAATGGTGGCTCCGCGCAGACCACATCCACGCCCCACGAGCTCACGACTGTCACATCGCGCAAGCGCAAACTTCGCCAACTGCAACAGCAGATGAATCAGCTCCATCAGCAGGAGGTGTTGAgcgacgaggacgaggaggaggatgagcaCGAGGACGGGGAGCACCCGGCCACGGGAGCCAGGAATCTGGGGCGGCACAAGCAGCGCCGCAGCACCCAGGCCTCCATTGTGGTGGACTACAGCAGTGGCGATGCCAGCTCCCTGCGCAAAAAGTTCCGGCTCAATCGCTCGGCGGCCAGTCTATCGGAATCGGGATTCGTGGATGCCAGCAGCACGGTCCACAGTGGCTATCTGGGCAATAGTAGTGGCAGTGCCACCAacaccacaaccaccaccgCCAGCGGTGGTGCAGTGGCTCCAGCCTCGGTGGCAAGTGGTGGAGTGGCCGGAGCAACTgcctccagcagcagcagtagcagcagcagcggcggatCCGGCGGCTCCTCGCCCCAGGGCCCCAGCCTCTCCAGCGGCGAGTCGGGCATCGGAGCCGGGGACGAGCACATGAAGTACCTGTGCCCCATCTGCGAGGTGGTCTCGGCCACACCGCACGAGTTCACCAACCACATCCGGTGCCACAACTACGCCAACGGCGACACGGAGAACTTCACCTGCCGCATTTGCTCCAAGgtGCTATCCTCGGCCTCATCCCTGGACAGACACGTGCTGGTTCACACGGGCGAGCGGCCCTTCAACTGCCGCTACTGCCACCTGACCTTCACCACCAACGGCAACATGCACCGCCACATGCGCACCCACAAGCAGCACCAAGTtgcgcagtcgcagtcgcaacagcagcagtcgcagcagcaacagtcgcagcagcagcagcagcaacaccagcgacgacagcagcaacatcagccggcgcagcagcagcagaatcCCGCCCAGCAACTGGTAACCACCGCCTTGTCCGCTGGACGTGCCGAGAGCTACGAGAGCGATGCCAGCTGCTCCACGGACGTGTCCAGTGGTCATAGTCACTCGCAcagtcgcagcagcagctccctcaacaacaacaacaactcgCACAAGGCTAACAACAACCTGAAGGATCTGGATGTGGATCAGGCGGAGGATCAGGATCAGTTGGAGGGCAAGCAGCGCCGCCTGAAGACGACCATTAACAACAACATCATAGACAGCGGGCACCAGGAGGAGAtcgaggaggatgaggaggagggcGATGATGCGGATGTGGCCATGCTGACCAGCACACCCGATGTGGCCACCCTGCTGGCCGGAGCCAGTGCCTCCGGAGCGGCCTCCCGCTCGCCCTCCCCCTCTCCCTCGCCATCCGCCTCGCCATCGCTGCTCCTGAGTTGTCCCGCCTGCGGAGCCTCCGACTTCGAGACCCTGCCCGCCCTGTGTGCCCACCTGGATGCCAGGCACTCGGACATACCGGCCAAGTGTCGCGATTGCGAGGTGATCTTCGCCAGCCATCGCCAACTGCAGGCCCACTGCTGTCGGGGATCCTCGGGACTGCCGCCGCTCCTCGGAGCCAGCAGTTCACCTCTGCATCATGAGGAGGATCAGGAGaacgaggaggatgaggagctgGAGCGGAAGGTGGGAGTGCCCAGCCAGAGCGAGGACTTCTTCCACCAGCTGTATCTGAAGCAAAAGACAGCCGGAGCTGGTGGTGCCATCTCCCATCCCCCGTCGCCCATCAAACACGAACCGGCGGACAGCAAGGACCTGGCGGATATACAAAGCATCCTGAACATGACcagctccagttccagtttcCTGCGCAACTTCGAGCAGTCGGTGAACACGCCCAGTTCCAGTCAGTACAGTTTGGATGGCAGGgatcaggaggaggaggcccaGGATGCGTTTACCTCGGAGTTCCGCAGGATGAAGTTACGCGGTGAGTTCCCCTGCAAGCTGTGCAGCGCCGTCTTTCCCAATCTGCGCGCCCTCAAGGGTCACAACCGAGTGCATCTGGGTGCAGTGGGTCCAGCCGGACCCTTCCGCTGCAACATGTGTCCCCATGCCGTCTGCGACAAGGCCGCCCTGGTGCGCCACATGCGCACCCACAACGGGGATCGTCCCTACGAGTGTGCCGTCTGCAACTATGCCTTCACCACCAAGGCCAACTGCGAGCGCCACCTGAGGAACCGGCACGGGAAGACCAGTCGGGACGAGGTGAAGCGGGCCATTGTCTACCATCCGGCGGAGGATGCCGGCTGCGAGGACAGCAAGTCGCGTCTGGGCGAGGATCTGGCCGATCTCAGTTTCCGTTCCATCAGTCCCACGCCACCGCCTCCGCCGGTCATCATCAGTGGCGAGAGCAGCAGTTCCCAGTTGAAGCACATGCTCCTGGGCGAGAGTCACCTGGCTCCGGTGGCCCAGCCGCCTCTGAAGATCCAGGTGAAGAGTCTCGACCAGCTGGTGGATAAGAAGCCAGCCAAGCCAGCTGCTCCGGCTccacagcagcagctccaggaGAAGATAGGAGCTGCCCTGGACTTCAGCATGGATGTGTTGGATCTCAGCAAGAAGCCAACTGGTGGAGCAATAGCCCTCACACCCTCGGTCACACCCACTCCGCCCACGCCCGCCCCTGGAGTTGTGGCTCCGGGTGTGGGTGCCCCTGCCGACCTTGCCGCCGCtttggagcagcagcaactactCCTGGCCCAGCAGCAGCTCTTCGGCGCTGGCGGAGATGCCGCCTCCCAGTACATGCAGCAGCTGTTCCGCATGTTCCAGTTCCAGTCCCAGACACCGGGATTCCCCTTCTTTCCCTTCATGGCACCACCGCCGCCTCAGGCCAATCCCGAGAAGCCACCGCTGGTGAGTCCACCCAATCGCATGAATCCCCTGCCAgtgggagtgggcgtgggtgtCCCAGTGCCACCTGGTGGCCCTGTCAAGATGGTCATCAAGAATGGAGTCCTGATGCCCAAGCAGAAGCAGCGTCGCTATCGCACCGAGCGTCCCTTTGCCTGCGAGCACTGCTCGGCAAGATTCACCCTGCGCTCAAACATGGAACGCCATGTGAAGCAGCAGCATCCGCAGTTCTATGCCCAGCGCCAGAGGAGCGGTCACCATGTGATGAGGGGCAGAGGAGCCTCCAGTGCCGcagccgctgctgccgccgccgccgccgctgcagcTGCCATGGGTCCAGGATCTGCTGCCTCCGCCGGCTCCAATCACCATCATAGTCATGGCCATGGCTCCCATGGACATGCTCCCATCTCGGAGCAGGTCAAGTACGCCATTCTCGCCCAGCAACTGAAGGCCCACAAGAACACCGATCTGCTGCAGCAAGCTTTGGCCCATGGTTCCAGCAGTGTGGCCGGAAATCCCCTCCTGCACTTCGGCTACCCACTGGCCACACCCAGTCCCCTGCACAATGGCTCCGGCCAGGGCAATGGCCAGGCCATCACCATGGACGACGATGAGCCCAAGCTGATCATCGACGAGGATGACAACGAGCATGATGAGGTGGAGCCGGAGGAGGTGGATGACTtcgaggaggacgaggacgaagAGGAGATGGATGAGCCGGAGGAGGAGCCCGAGCTGATCCCGGATGAGCAGCCAgtcgaggaggaggaagaggagcaGGAAGAGCCTGAGCTGCCCAAGCCGCTGGAGCAGCTGTCCCTGGTGGCGCCCACCAATGAGGCGGCCCAGAAGATGGCCGAGACTATCCTGGAGCAGGCCATCAAGGCGGGCAAACCAACCAGTCCGCCGCCCCAGGAGAATACCCCGCCAGTTGACACCAAGGTGGTCACCACCATGCAGGAACCAGCCGCCACCAGCAATCCCAGCAGCCTGAAGACCATGATTGCCCAGGCCGAGTCCGTGGGTAAGTCCCTGAAAGAGGTGGCCAGTTCGCCGTTCAAGGACGAGTCGCAGGATCTGGTGCCGGTGGCCAAGTTGGTGGACAACGCCACCAGTCAGAACATGAGCTTCAACAGCTATTTCCGGCCCAGCGATGTGGCTAACCACATGGAGCAGAGCGACGAGGAGGGCCTGGTGGCCTCCGGGAGCGCCAGCGAgagcaacaacagcggcaCCGAGGATGTGACCAGCAGCAGTTCCGGCAGCGAGCCCAAGAAGAAGTCCGCCTATAGCTTGGCGCCCAACCGCGTCTCCTGCCCCTACTGCCAGCGGATGTTCCCCTGGAGCAGCTCGCTGCGCAGGCACATCCTCACCCACACCGGCCAGAAGCCCTTCAAGTGCTCCCACTGCCCCCTGTTGTTCACCACCAAGAGCAACTGCGACCGCCATCTGCTGCGCAAGCACGGCAACGTGGAGTCGGCCATGTCGGTGTATGTGCCCACCGAGGATGTGAGCGAGCCGATTCCGGTGCCCAAGTCCGTGGAGGAGAtcgagctggaggagcagcgCCGGCGGCAGGAGGCGGAGCGCGAGAAGGAGCGTGAGCTGGAGCGGGAGCGGGAGTTGGAACGGGAGCGCGAGCTGGAGCGGGAGAAGGAGCGTGAGCTGGAGAAGGAGCGGGAACGCCAGCAGCTCATCCAAAAACTGGCGGCCCAAATGAATGCCGCTGCCaatgccgctgccgccgccgccgccgctgcagcTGCATCTTCGCTGGGCAATGGCAATGGTGGAGCACCGAATGGCCCACTGGGAGATGCACTCGCTGGCGGAGATCTGCCCTACAAGTGCCACCTGTGCGAGGGCTCCTTTGGCGAGCGTCTGCAGTGCCTGGAGCACATCAAGCAGGCCCATGCCCATGAGTTCGCCCTGCTGCTGGCCAAGGGTGCCATCGAGAACGAGTCCCTGGAGGGGCCCAATCCCCACCAGCCGATGTCCCAGCAGTCGGCCGTGCATTCGGACGATGAGGCCGCCAATGGCGGGGGTCGTGGCAAGTATCCGGACTATAGCAACCGCAAGGTGATTTGTGCCTTCTGCGTGCGCCGTTTTTGGTCCACCGAGGATCTGCGTCGCCACATGCGCACCCATTCGGGCGAAAGGCCCTTCCAGTGCGACATCTGCCTGAGGAAGTTCACCCTGAAGCACAGCATGCTGCGGCACATGAAGAAGCACAGTGGTCGGGCCCACAATGGGGACACACCGGGCTCCGATTGCTCCGATGATGAGCAGGTGGCCAGTCCGCCCAGCACACCGGCTCCACTGCCTCAGCAACTGCCTCTGCCCAATCCCGGCCAGCCCACCagcgccaacaacaacaacagctgccacaacaacaacaacaacattggGAGCTCCAAGCTGGGCCTGAAGCTGCCCAAGCTGCATGAGCTGCTGGACAAGGCGAGCGAATGGCGGGCCAGTCGGCTGGGCGAGCACAAGGAGAACATGGGCGAGGCCACACCCTCGGCGGCAGCCGTCGCCGGTTCGGATCTGATTGGCAACCTGCTGGGGATCAGCGACCAGGGCATCCTCAACAAGCTGCTCTCCTCCGCCGACGAGGCGGCCAAGCTCCTGGGCGTGGACAACAAGTAA
Protein Sequence
MLAAQQQQQQQHNSTGEAEMERQRRDSTTSESSLEHLDLGRTPKKLAGNGGSAQTTSTPHELTTVTSRKRKLRQLQQQMNQLHQQEVLSDEDEEEDEHEDGEHPATGARNLGRHKQRRSTQASIVVDYSSGDASSLRKKFRLNRSAASLSESGFVDASSTVHSGYLGNSSGSATNTTTTTASGGAVAPASVASGGVAGATASSSSSSSSSGGSGGSSPQGPSLSSGESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQVAQSQSQQQQSQQQQSQQQQQQHQRRQQQHQPAQQQQNPAQQLVTTALSAGRAESYESDASCSTDVSSGHSHSHSRSSSSLNNNNNSHKANNNLKDLDVDQAEDQDQLEGKQRRLKTTINNNIIDSGHQEEIEEDEEEGDDADVAMLTSTPDVATLLAGASASGAASRSPSPSPSPSASPSLLLSCPACGASDFETLPALCAHLDARHSDIPAKCRDCEVIFASHRQLQAHCCRGSSGLPPLLGASSSPLHHEEDQENEEDEELERKVGVPSQSEDFFHQLYLKQKTAGAGGAISHPPSPIKHEPADSKDLADIQSILNMTSSSSSFLRNFEQSVNTPSSSQYSLDGRDQEEEAQDAFTSEFRRMKLRGEFPCKLCSAVFPNLRALKGHNRVHLGAVGPAGPFRCNMCPHAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSRDEVKRAIVYHPAEDAGCEDSKSRLGEDLADLSFRSISPTPPPPPVIISGESSSSQLKHMLLGESHLAPVAQPPLKIQVKSLDQLVDKKPAKPAAPAPQQQLQEKIGAALDFSMDVLDLSKKPTGGAIALTPSVTPTPPTPAPGVVAPGVGAPADLAAALEQQQLLLAQQQLFGAGGDAASQYMQQLFRMFQFQSQTPGFPFFPFMAPPPPQANPEKPPLVSPPNRMNPLPVGVGVGVPVPPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASSAAAAAAAAAAAAAAMGPGSAASAGSNHHHSHGHGSHGHAPISEQVKYAILAQQLKAHKNTDLLQQALAHGSSSVAGNPLLHFGYPLATPSPLHNGSGQGNGQAITMDDDEPKLIIDEDDNEHDEVEPEEVDDFEEDEDEEEMDEPEEEPELIPDEQPVEEEEEEQEEPELPKPLEQLSLVAPTNEAAQKMAETILEQAIKAGKPTSPPPQENTPPVDTKVVTTMQEPAATSNPSSLKTMIAQAESVGKSLKEVASSPFKDESQDLVPVAKLVDNATSQNMSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSGSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQEAEREKERELERERELERERELEREKERELEKERERQQLIQKLAAQMNAAANAAAAAAAAAAASSLGNGNGGAPNGPLGDALAGGDLPYKCHLCEGSFGERLQCLEHIKQAHAHEFALLLAKGAIENESLEGPNPHQPMSQQSAVHSDDEAANGGGRGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGRAHNGDTPGSDCSDDEQVASPPSTPAPLPQQLPLPNPGQPTSANNNNSCHNNNNNIGSSKLGLKLPKLHELLDKASEWRASRLGEHKENMGEATPSAAAVAGSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00536996; iTF_00505607; iTF_00539880; iTF_00592611; iTF_00596871; iTF_00619370; iTF_00591922; iTF_00602830; iTF_00578768; iTF_00486833; iTF_00548307; iTF_00504886; iTF_00581752;
90% Identity
-
80% Identity
-