Dser004097.1
Basic Information
- Insect
- Drosophila serrata
- Gene Symbol
- -
- Assembly
- GCA_002093755.1
- Location
- NW:103328-105420[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9e-16 3.9e-13 48.6 0.0 2 45 392 435 391 435 0.95 2 3 0.045 92 2.6 0.0 28 37 465 474 464 479 0.90 3 3 3.9e-20 7.9e-17 60.4 0.0 2 42 501 541 500 543 0.96
Sequence Information
- Coding Sequence
- atgaaaataaaaataccaaaaccCTTCGAATTCTCTGGAACCCTGGTGCAGAGTCATTCTAGCTTCGCGTCGCGTTTGGAATTGCGTGAATTGAACTTTAAGAGAACTGTGGAAATCaattggaaaacaaaacacaacaaaatgAATCACCTGAAGTGGATGGGTCACTCGACCACGCTAATGGATATACAGCGGTCACTGCGCAACGACAACAAGACCTGCGAAGTGGTCCTGGCCTCCAGGGACGGCACCCGGGTGCGTGCCCACCTCTTCGTGCTGAGCACATGCAGCGATCTGATGCGTAACATCCTGGTGGACGTGCCGCCGGGCCAGGAGGCCACCATCATTCTGCCAGACATACGGGGTGACCTGCTCGAGAGCATGATGTCGTTCATCTACATGGGCGAGACAAGCCTGTCATCTGCCTCACTCTCCGAGTTCCTTGAGGCCATCAACCTACTTGGCATCAAGTCGGCAATAAGTTTCGAGTGCAACCCAACGGTAAGTTCGCCCAGTGCCGATCCAGACAACGGATCGCTGGCCGTTGAAACGGCCAAGTCAATATCTGGTCTGCAGATTGCCCAGGCCGAGCTGCTGGATGAGGGGGAGGAGGAAGATGGCGAGCAGCCAATGGTTGCCGTGCCGGCCACTGTCTTGGCCGAGCCCAGCCGCCCGCTGGAGTACCTAGACGTGTATGATGCACCGAAGATCACTTATTCCATCGAACACATGGACGGCAACACAAACGGCAGCCAGTTCATTCTTACCGAGAACACAGGCACTTTCACCATCACCCAGTCCACAACCAGTTTGCCGAAGATGGAGCCCCAGGGTAACGCGCAGGAGAACGCGGAGTTGGTGGACGAGGAAGGGGAGGAGGACATACCCGATGAGCCCGAAGAGCAGGACACACAGATAATGGAAGAGGATTACGCTCCATCCGATCCGCTGGTTGAGCTAAACACTGCCGCCGAAATGGATGACGACGACAACTTGCACGAGGATCTGGTGGACGAGGAGGATGTTATGGACATAAAGCCACGCAAGTTGGGCGGCGGAGGAAAGCCGCGTATACGACGTCCGCACAATCCGAAGGCCGTCAAGCGACTGCCAGCTAAGCCCCATCGACAAGAACAGTATGGATCGCTTAAGCGCGAGGTAAAGGATGATATCAACGACGCCTTGGACCTCGCAGCGGACGCTGTGATCATAGAGGGGCTTAGCCTCCAGAAGGCCGCGGATCGGTTCGACATCTCCAAGACGGTTCTGTGGCGTCGCGTCCGCACCAACCCCGCCTATATGCGCAGCAATCGCGAAAGACCATCACTTCTGGAGGCTTACGAGCGCCTGAAGAACGGCGACTCGTTGAAGAACATTAGCCAGGATCTCCGCATACCCATGTCCACGCTGCACCGCCACAAGGTGCGTCTGTCGGCCCAGGGCCGCCTGCCGAACTTTGTGTCCTGCCGCCGACGGGACACGACACCAAAGGACGAGCTGCGCGACAAGCTGGCCAAGGCGGTCCATGCATGCGTCAACGAGGGCATGTCGCAGAACCACGCAGCCAACCTTTTCGAGATCCCTAAGAGCACGCTCTGGCGCCACCTGCAACGACGGATGTCGAACGAGGACCGAAAGGTTAAGAAGGAACTACAGGACGAGTACGATGACATACTAAATTAG
- Protein Sequence
- MKIKIPKPFEFSGTLVQSHSSFASRLELRELNFKRTVEINWKTKHNKMNHLKWMGHSTTLMDIQRSLRNDNKTCEVVLASRDGTRVRAHLFVLSTCSDLMRNILVDVPPGQEATIILPDIRGDLLESMMSFIYMGETSLSSASLSEFLEAINLLGIKSAISFECNPTVSSPSADPDNGSLAVETAKSISGLQIAQAELLDEGEEEDGEQPMVAVPATVLAEPSRPLEYLDVYDAPKITYSIEHMDGNTNGSQFILTENTGTFTITQSTTSLPKMEPQGNAQENAELVDEEGEEDIPDEPEEQDTQIMEEDYAPSDPLVELNTAAEMDDDDNLHEDLVDEEDVMDIKPRKLGGGGKPRIRRPHNPKAVKRLPAKPHRQEQYGSLKREVKDDINDALDLAADAVIIEGLSLQKAADRFDISKTVLWRRVRTNPAYMRSNRERPSLLEAYERLKNGDSLKNISQDLRIPMSTLHRHKVRLSAQGRLPNFVSCRRRDTTPKDELRDKLAKAVHACVNEGMSQNHAANLFEIPKSTLWRHLQRRMSNEDRKVKKELQDEYDDILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00540993; iTF_00572001; iTF_00485252; iTF_00524516; iTF_00609092; iTF_00491431; iTF_00571818; iTF_00483085; iTF_00524337; iTF_00482901; iTF_00593941; iTF_00609269; iTF_00612917; iTF_00541177; iTF_00594649; iTF_00612732; iTF_00593757; iTF_00491614; iTF_00485055; iTF_00490183; iTF_00489998; iTF_00492337; iTF_00492151; iTF_00525803; iTF_00569611; iTF_00525968; iTF_00569788; iTF_00561679; iTF_00561865; iTF_00489297; iTF_00489480; iTF_00590161; iTF_00590343; iTF_00480274; iTF_00531764; iTF_00480089; iTF_00531577; iTF_00477939; iTF_00478119; iTF_00606230; iTF_00606434; iTF_00613594; iTF_00613426; iTF_00527228; iTF_00527412; iTF_00617757; iTF_00617556; iTF_00533022; iTF_00533201; iTF_00488768; iTF_00488584;
- 90% Identity
- iTF_00488768;
- 80% Identity
- iTF_00594649;