Dpec002614.1
Basic Information
- Insect
- Drosophila pectinifera
- Gene Symbol
- -
- Assembly
- GCA_008042775.1
- Location
- VNKC01001592.1:33880-35406[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9e-16 3.7e-13 48.8 0.0 2 45 339 382 338 382 0.95 2 3 0.046 92 2.7 0.0 28 37 412 421 411 426 0.90 3 3 3.9e-20 7.7e-17 60.6 0.0 2 42 448 488 447 490 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGACCACGGTAATGGAGATTCAGCGCTCGCTGCGCAACGACAGTCAGACCTGCGAGGTGGTCCTGGCCTCCAGGGACGGCACCCGGGTGCGCGCCCACATCTTCGTGCTGAGCACCTGCAGCGACCTGATGCGTAACATCCTGGTGGACGTGCCACCGGGCCAGGAGGCCACTATTATCCTACCCGACATCCGCGGCGAACTGCTTGAGAGCATGATGTCGTTCATCTATATGGGTGAGACGAGCTTGTCCTCTGCATCGTTGTCGGAGTTCCTCGAAGCCATCAATCTGCTGGGTATCAAGTCGGCCATAAGTTTCGAGTGCAACCCAACGGTCAGCTCTCCCAGCGCTGATCCTGACAACGGAACACTGGCTGTGGAGTCTGCCAAGTCGATAACTGGCCTTCAAATTGCCCAGGCCGAGCTGctcgacgaggaggaggagacagAGGCCGAGCAGCCATCGAGTTCCGTGCCGGCCACTGTACTGGCCGAGCCCAGCCGCCCGATGGAGTACCTGGACGTGTACGATGCGCCGAAGATCACATACTCCATCGAGCATATGGACGGTAACACGAACGGCAGCCAATTCATTCTCACCGAGAACACTGGAACCTTCACCATCACTCAGACTGCGTCTAGTCTGTCAAAAATGGAATCCGCAGAGAATGCGCAGGAGAGCGTGGAGCTAGTGGACGAGGATGTGGAGGACGACATACCGGACGAGCCTGAAGAGCCAGACACACAAATAATGGAGGAGGAGTACGCGCCATCCGATCCGCTAATTGAACTAAACGCTGCCGCCGAGATGGACGACGATGACAACTTGCACGAGGACCTggtggacgaggaggagatcCTAAACATAAAGCCGCGCAAGCTCGGTGGCGGAGCAAAGCCGCGTGGACGTCGTCCGCATAATCCGAAGACCGTCAAGCGATTGCCCGTTAAGCCCCATCGTATTGAACCCTACGGTTCGCTAAAGCGCGAGATGAAAGATGATATCAATGATGCATTGGATCTCGCAGCCGACGCAGTGATCCTCGAGGGACTGAGCCTACAGAAGGCCGCCGACCGCTTCGACATCTCCAAGACAGTATTGTGGCGGCGTGTGCGCACCAATCCTGCCTACATGCGCAGCAATCGCGAACGGCCTTCACTTTTGGAGGCTTACGAACGTCTGAAGACCGGCGACTCGCTGAAGAACATTAGCCAGGATCTCCGCATACCCATGTCCACGCTCCACCGGCACAAGGTTCGGCTATCGGCCCAGGGCCGCCTACCCAACTTTGTTTCCTGTCGCCGGCGAGATACGACACCCAAGGACGAGCTGCGCGACAAGCTGGCCAAGGCTGTGCATGCCTGCGTCAACGAGGGAATGTCCCAGAACCACGCAGCCAACCTGTTCGAGATCCCCAAGAGCACGCTCTGGCGCCACCTACAGCGCCGGATGTCGAACGAGGATCGCAAGGTcaagaaggagcagcaggacgactacgacgacgatATGCTAAACTAG
- Protein Sequence
- MGHSTTVMEIQRSLRNDSQTCEVVLASRDGTRVRAHIFVLSTCSDLMRNILVDVPPGQEATIILPDIRGELLESMMSFIYMGETSLSSASLSEFLEAINLLGIKSAISFECNPTVSSPSADPDNGTLAVESAKSITGLQIAQAELLDEEEETEAEQPSSSVPATVLAEPSRPMEYLDVYDAPKITYSIEHMDGNTNGSQFILTENTGTFTITQTASSLSKMESAENAQESVELVDEDVEDDIPDEPEEPDTQIMEEEYAPSDPLIELNAAAEMDDDDNLHEDLVDEEEILNIKPRKLGGGAKPRGRRPHNPKTVKRLPVKPHRIEPYGSLKREMKDDINDALDLAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRSNRERPSLLEAYERLKTGDSLKNISQDLRIPMSTLHRHKVRLSAQGRLPNFVSCRRRDTTPKDELRDKLAKAVHACVNEGMSQNHAANLFEIPKSTLWRHLQRRMSNEDRKVKKEQQDDYDDDMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00594467;
- 90% Identity
- iTF_00488768;
- 80% Identity
- iTF_00572001;