Dkan001440.1
Basic Information
- Insect
- Drosophila kanapiae
- Gene Symbol
- -
- Assembly
- GCA_008042475.1
- Location
- VNJM01001856.1:176909-178522[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1e-17 6.4e-14 51.4 0.0 2 45 346 389 345 389 0.96 2 3 0.027 55 3.6 0.0 27 37 418 428 415 433 0.89 3 3 6.1e-19 1.3e-15 56.9 0.0 2 40 455 493 454 495 0.96
Sequence Information
- Coding Sequence
- atgAATCACCTGAAGTGGATGGGCCACTCGAGCACGGTAATGGAGATACAGCGTTCGCTGCGTAACGACAACCAAACTTGCGAGGTGGTCCTAGCCTCCAGGGACGGCACCCGAGTGCGCGCCCATCTTTTCGTGCTGGGCACCTGCAGTGATCTGATGCGCAGCATCTTGGTGGACGTGCCGCCGGGCCAGGAGGCCACCATCATCCTGCCCGACATTCGCGGCGAGCTGCTCGAGAGCATGATGTCGTTCATCTACATGGGCGAGACGAGCCTGTCGTCCGCCTCCCTCTCCGAATTCCTCGAGGCCATCAACCTGCTGGGCATCAAGTCGGCCATCAGTTTTGAGTGCAGCCCGACGGTCAGTTCACCCAGTGAGGATCCAGAGAACAAATCGTTGGCCGTGGAGACGGCCAAGTCAATAACTGGCCTGCATATCGCCCAGGCCGAGCTTCtagacgaggaggaggagggagagGCCGAGCGACCGATGGTTTCCGTGCCCTCCACTGTTCTTGGCGAACACAGCCGCCCGCTGGAGTACCTGAACGTTTATGATGCCCCAAAGATCACCTACTCCATCGAGCACATAGAGGGCAACACGAACAGCAACCAGTTCATACTCACCGATAACACGGGCACCTTCACCATCACTCAGTCCGCGTCCAGTTTGTCCAAAATCGACCCTCCGGGCAACGCGCAGGAGACCGCCGAGCTGGTGGACGAGGATGTGGAGGAGGACATACCGGACGAGGCCGAAGAGCCAGATACACAGATAATGGAGGAAGAGTACACTGCATCCGACCCGCCGATTGAGCTGAACGCTGCCGCTGAagtggacgacgacgacgataaCTTGCACGAGGACCTggtggacgaggaggagatcCTCGACATTAAGCCGCGCAAGCCGGGCGGCGGGGGAAAGCCGCGTGGTCGTCGTCCGCACAATTCGAAGACCGTAAAGCGATTGCCTGCTAGACCCCATCGTAACGAACCGTATGGATCGCTGAAGCGCGAGATGAAAGATGATATTAACGATGCTTTGGACCTAGCAGCGGAGGCTGTGATCGTCGAAGGTTTGAGCCTGCAAAAGGCCGCCGACCGCTTCGACATCTCCAAGACGGTCCTGTGGCGTCGCGTGCGCACCAATCCCGCCTACATGCGCAGCAATCGCGAGCGGCCATCGCTTCTAGAGGCTTACGAGCGCCTCAAGACCGGCGATTCGCTGAAGAACATTAGCCAGGATCTCAGCATACCCATGTCCACGCTGCACCGTCACAAGGTTCGTCTGTCGGCCCAAGGGCGCCTCCCCAATTTTGTGTCCAGCCGGCGGCGGGACTCGACACCGAAGGACGAGCTGCGCGACAAGCTGGCCAAGGCGGTGCATGCCTGCCTCAACGAGGGCATGTCGCAGAACCACGCAGCCCACCTGTTTGAAATACCCAAGAGCACGCTATGGCGTCACCTACAGCGACGGACGTTGAACGAGGATCGCAAGGTTAAGAAAGAGCAACAGGACGATTACGACGATGATATGCTAAACTAG
- Protein Sequence
- MNHLKWMGHSSTVMEIQRSLRNDNQTCEVVLASRDGTRVRAHLFVLGTCSDLMRSILVDVPPGQEATIILPDIRGELLESMMSFIYMGETSLSSASLSEFLEAINLLGIKSAISFECSPTVSSPSEDPENKSLAVETAKSITGLHIAQAELLDEEEEGEAERPMVSVPSTVLGEHSRPLEYLNVYDAPKITYSIEHIEGNTNSNQFILTDNTGTFTITQSASSLSKIDPPGNAQETAELVDEDVEEDIPDEAEEPDTQIMEEEYTASDPPIELNAAAEVDDDDDNLHEDLVDEEEILDIKPRKPGGGGKPRGRRPHNSKTVKRLPARPHRNEPYGSLKREMKDDINDALDLAAEAVIVEGLSLQKAADRFDISKTVLWRRVRTNPAYMRSNRERPSLLEAYERLKTGDSLKNISQDLSIPMSTLHRHKVRLSAQGRLPNFVSSRRRDSTPKDELRDKLAKAVHACLNEGMSQNHAAHLFEIPKSTLWRHLQRRTLNEDRKVKKEQQDDYDDDMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00594467;
- 90% Identity
- iTF_00569611; iTF_00525968; iTF_00569788;
- 80% Identity
- iTF_00525968;