Dtsa017998.1
Basic Information
- Insect
- Drosophila tsacasi
- Gene Symbol
- -
- Assembly
- GCA_018904565.1
- Location
- JAEIHY010017882.1:22454-24042[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2e-16 5e-13 48.8 0.0 2 45 320 363 319 363 0.95 2 3 0.05 1.2e+02 2.8 0.0 28 37 393 402 392 407 0.90 3 3 3.9e-20 9.7e-17 60.7 0.0 2 42 429 469 428 471 0.96
Sequence Information
- Coding Sequence
- ATGAATCACCTGAAGTGGATGGGCCACTCCACCACGCTGATGGAGATACAGCGCTCGCTGCGCAACGACAACCAGACCTGCGAGGTGGTCCTGGCCTCCAGGGACGGCACACGGGTGCGCGCCCACCTCTTCGTGCTGAGCACCTGCAGCGACCTGATGCGCAACATCCTTGTGGACGTGCCGCCGGGCCAGGAGGCCACCATCATCCTGCCCGACATACGCGGCGAGCTGCTCGAGAGCATGATGTCGTTCATCTACATGGGCGAGACGAGCCTGTCGTCCGCCTCCCTGTCCGAGTTCCTCGAGGCCATCAACCTGCTGGGCATCAAGAAACGGGGCACTGGCCGTAGNGGCTTGCAGATCGCCCAGGCCGAGCTGCTGGACGAGGGAGAGGAGGAAGAGGGCGAGCAGCCAATGGATGCCGTGCCGACCACTGTTCTGGCCGAGCCCAGCCGCCCGCTGGAGTACTTGGAAGTCTATGATGCACCGAAGATCACCTATTCCATCGAGCACATGGACGGCAACACGAACGGCAGCCAGTTCATTCTCACCGAGAACACAGGCACCTTCACCATTACTCAGTCCGCCTCCAGTTTGCCGAAGATGGAGTCCCAGGACAACGCGCAGGAGAACGCGGAGCTGGGGGACGAGGATGTCGAAGATGACCTACCTGACGAGCCCGAAGACCCAGACACACACATAATGGAGGAGGAGTACGCTCCCTCCGATCCGCTAATTGAGCTAAACGCAGCTGCCGAAATGGACGAAGACGACAACTCGCACGAGGATTTGGTGGACGAGGAGGATATCTTGGACATAAAGCCGCGCAAGCTGGGCGGCGGGGGAAAGCCGCGTGGACGTCGTCCGCACAATCCGAAGGCCGCCAAGCGCCTGCCAGCTAAGTCCCATCGCCAAGAACAGTTCGGATCGCTTAAGCGCGAGGTTAAGGATGATATCAACGACGCCTTGGATCTCGCAGCGGACGCCGTGATCCTCGAGGGGCTGAGCCTGCAGAAGGCCGCCGACCGCTTCGACATCTCCAAGACGGTCCTGTGGCGTCGCGTGCGCACCAATCCCGCCTATATGCGCAGCAATCGCGAAAGGCCATCGCTCCTGGAGGCTTACGAGCGCCTGAAGACCGGCGACTCGTTGAAAAACATTAGCCAGGATCTCCGCATACCCATGTCCACGCTGCACCGTCACAAGGTGCGTCTGTCGGCCCAGGGCCGCCTTCCAAACTTTGTATCCTGCCGCCGCCGGGATTCGACACCGAAGGACGAGCTGCGCGACAAGCTGGCTAAGGCGGTGCATGCCTGCGTCAACGAGGGCATGTCGCAGAACCACGCAGCCAACCTGTTCGAGATCCCCAAGAGCACGCTCTGGCGCCACCTGCAGCGACGCATGACGAACGAGGATCGGAAGGTTAAGAAGGAGCTGCACGACGACTACGATGACATGCTAAACTAG
- Protein Sequence
- MNHLKWMGHSTTLMEIQRSLRNDNQTCEVVLASRDGTRVRAHLFVLSTCSDLMRNILVDVPPGQEATIILPDIRGELLESMMSFIYMGETSLSSASLSEFLEAINLLGIKKRGTGRXGLQIAQAELLDEGEEEEGEQPMDAVPTTVLAEPSRPLEYLEVYDAPKITYSIEHMDGNTNGSQFILTENTGTFTITQSASSLPKMESQDNAQENAELGDEDVEDDLPDEPEDPDTHIMEEEYAPSDPLIELNAAAEMDEDDNSHEDLVDEEDILDIKPRKLGGGGKPRGRRPHNPKAAKRLPAKSHRQEQFGSLKREVKDDINDALDLAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRSNRERPSLLEAYERLKTGDSLKNISQDLRIPMSTLHRHKVRLSAQGRLPNFVSCRRRDSTPKDELRDKLAKAVHACVNEGMSQNHAANLFEIPKSTLWRHLQRRMTNEDRKVKKELHDDYDDMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00594467;
- 90% Identity
- iTF_00613594;
- 80% Identity
- iTF_00613594;