Dvul010022.1
Basic Information
- Insect
- Drosophila vulcana
- Gene Symbol
- -
- Assembly
- GCA_008042555.1
- Location
- VNJP01008293.1:147494-149092[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-16 6.5e-13 48.8 0.0 2 45 342 385 341 385 0.95 2 3 0.052 1.6e+02 2.7 0.0 28 37 415 424 414 429 0.90 3 3 4.2e-20 1.3e-16 60.6 0.0 2 42 451 491 450 493 0.96
Sequence Information
- Coding Sequence
- atgAATCACCTGAAGTGGATGGGCCACTCGACCACGCTGATGGAGATACAGCGCTCGCTGCGCAACGACAACCAGACCTGCGAAGTTGTCCTCGCCTCCAGGGACGGCACACGGGTGCGCGCCCACCTTTTCGTGCTGAGCACCTGCAGCGACCTGATGCGTAACATCCTGGTGGACGTGCCGCCGGGCCAGGAGGCCACCATCATCCTGCCCGACATACGCGGCGAGCTGCTCGAGAGCATGATGTCGTTCATTTACATGGGCGAGACGAGCCTGTCGTCCGCCTCCCTGTCCGAGTTCCTCGAGGCCATCAACTTGCTTGGCATCAAGTCGGCCATAAGTTTCGAGTGCAACCCAACTGTCAGTTCTCCCAGTGCCGATCCAGAAAACGGATCACTGGCCGTAGAGACGGCCAAGTCGATAAGTGGCCTGCAGATCGCTCAGGCCGAGCTGCTGGacgagggagagggagaggaggACGAGGGCGAGCAGCCAATGGTTACCGTGCCGGCCACTGTTCTGGCCGAGCCCAGCCGCCCGCTGGAGTACTTAGACGTCTATGATGCGCCGAAGATCACTTATTCGATCGAACACATGGACGGCAACACGAACGGCAGCCAGTTCATTCTCACCGAGAACACAGGCACCTTCACCATCACTCAGTCCGCATCCAGTTTGCAGAAGATAGAGCCCCAGGGCAACGCGCAGGAGAACGCGGAGCTGGCGGACGAGGATGTCGAGGAAGACATAGCTGACACACAGATTTTGGAGGAGGAGTACGCTCCATCCGATCCGCTAATTGAGCTAAACACAGCCGCCGAATTGGAGGAAGACGACAACTCGCACGAGGATCTggtggacgaggaggaggatatcTTGGACATGAAGCCGCGCAAGCTGGGCGGCGGGGGAAGGCCGCGTGGTCGTCGTCCGAACAATCCGAAGGCCGTCAAGCGCCTGCCAGCTAAGTCCCATCGCCAAGAACAGTATGGAACGCTTAAGCGCGAGGTAAAGGATGATATCAACGACGCCTTGGATCTCGCCGCGGACGCTGTGATCCTGGAGGGGCTGAGCTTGCAGAAGGCCGCCGACCGCTTCGACATCTCCAAGACGGTCCTGTGGCGTCGTGTGCGCACTAATCCCGCTTATATGCGCAGCAATCGCGAAAGGCCATCGCTTCTGGAGGCTTACGAGCGCCTGAAGACCGGCGACTCGTTGAAAAACATTAGCCAGGATCTCCGCATACCCATGTCGACGCTGCACCGTCACAAGGTGCGTCTGTCGGCTCAGGGCCGCCTTCCAAACTTTGTATCCTGCCGCCGGCGGGATACGACACCGAAGGACGAGCTGCGCGACAAGCTGGCTAAGGCGGTGCATGCCTGCGTCAACGAGGGCATGTCGCAGAACCACGCAGCCAACCTGTTTGAGATCCCCAAGAGCACGCTCTGGCGCCACCTGCAGCGACGCATGACAAACGAGGATCGAAAGGTTAAGAAGGAATTGCACGACGACTACGATGACATGCTAAACTAG
- Protein Sequence
- MNHLKWMGHSTTLMEIQRSLRNDNQTCEVVLASRDGTRVRAHLFVLSTCSDLMRNILVDVPPGQEATIILPDIRGELLESMMSFIYMGETSLSSASLSEFLEAINLLGIKSAISFECNPTVSSPSADPENGSLAVETAKSISGLQIAQAELLDEGEGEEDEGEQPMVTVPATVLAEPSRPLEYLDVYDAPKITYSIEHMDGNTNGSQFILTENTGTFTITQSASSLQKIEPQGNAQENAELADEDVEEDIADTQILEEEYAPSDPLIELNTAAELEEDDNSHEDLVDEEEDILDMKPRKLGGGGRPRGRRPNNPKAVKRLPAKSHRQEQYGTLKREVKDDINDALDLAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRSNRERPSLLEAYERLKTGDSLKNISQDLRIPMSTLHRHKVRLSAQGRLPNFVSCRRRDTTPKDELRDKLAKAVHACVNEGMSQNHAANLFEIPKSTLWRHLQRRMTNEDRKVKKELHDDYDDMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00594467;
- 90% Identity
- iTF_00488768;
- 80% Identity
- iTF_00617757;