Dpav006055.1
Basic Information
- Insect
- Drosophila parvula
- Gene Symbol
- -
- Assembly
- GCA_018904695.1
- Location
- JAEIIG010023348.1:9503-11116[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9e-16 4.3e-13 48.7 0.0 2 45 346 389 345 389 0.95 2 3 0.024 54 3.6 0.0 27 37 418 428 415 433 0.89 3 3 3e-19 6.8e-16 57.7 0.0 2 41 455 494 454 497 0.95
Sequence Information
- Coding Sequence
- ATGAATCACCTGAAGTGGATGGGCCACTCGAGCACGGTAATGGAGATACAGCGTTCGCTGCGTAACGACAACCAAACTTGCGAGGTGGTCCTGGCCTCCAGGGACGGCACCCGGGTGCGTGCCCATCTTTTTGTGCTGGGCACCTGCAGTGACCTGATGCGCAGCATCCTGGTGGACGTGCCCCCGGGCCAGGAGGCCACCATCATCCTGCCCGATATTCGTGGCGAACTGCTCGAGAGCATGATGTCGTTCATCTACATGGGTGAGACGAGCCTGTCGTCCGCCTCCCTGTCCGAATTCCTCGAGGCCATCAACCTGCTGGGCATCAAGTCGGCCATCAGTTTCGAGTGCAGCCCGACTGTCAGCTCACCCAGTGAGGATCCAGACAACAAATCGTTGGCCGTGGAGACGGCTAAGTCAATAACTGGACTGCATATCGCCCAGGCCGAGCTTCTAGACGAGGAGGAGGAGGGAGAGGCTGAGCGGCCGATGGTTTCCGTGCCGTCCGCCGTTCTTGGCGAACACAGCCGCCCGTTGGAGTACCTGAACGTTTATGATGCGCCGAAGATCACCTACTCCATCGAGCACATAGAGGGCAACGCGAACAGCAACCAGTTCATTCTCACCGATAACACGGGCACCTTCACCATCACTCAGTCCGCGTCCAGTTTGGCCAAGATCGACCCTCCGGGCAACGCGCAGGAGACCGCGGAGCTAGTGGACGAGGATGCTGAGGAGGACATACCGGACGAGGCCGAAGAGCCAGACACACAGATAATGGAGGAAGAGTACACTGCATCCGACCCGCCGATTGAGCTGAACGCTGCCGCTGATGTGGACGACGACGACGATAACTTGCACGAGGACCTGGTGGACGAGGAGGAGATCCTCGACATTAAGCCGCGCAAGCCGGGCGGCGGGGTAAAGTCGCGTGGTCGTCGCCCGCACAATCCGAAGACCGTCAAGCGATTGCCTGCTAGGCCGCATCGACACGAACCGTATGGATCGCTGAAGCGCGAGATGAAAGATGATATCAACGATGCTTTGGACCTAGCAGCGGACGCTGTGATCCTCGAAGGACTGAGCCTGCAGAAGGCCGCCGACCGCTTCGACATCTCCAAGACGGTCCTGTGGCGTCGCGTGCGCACCAATCCCGCCTATATGCGCAGCAATCGCGAGAGGCCATCGCTTCTAGAGGCTTACGAGCGCCTCAAGACCGGCGATTCGCTGAAGAACATTAGCCAGGATCTCAGCATACCCATGTCCACGCTGCACCGTCACAAGGTTCGTCTGTCGGCCCAGGGACGCCTCCCCAACTTTGTGTCCAGCCGGCGGCGGGACTCAACACCGAAGGACGAGCTGCGCGACAAGCTGGCCAAGGCTGTACATGCCTGCCTCAACGAAGGCATGTCGCAAAACCACGCAGCCCACCTGTTTGAAATACCCAAGAGCACGCTCTGGCGCCATCTACAGCGACGGACGGCGAACGAGGATCGCAAGGTTAAGAAAGAGCAACAGGACGATTACGACGATGATATGCTAAACTAG
- Protein Sequence
- MNHLKWMGHSSTVMEIQRSLRNDNQTCEVVLASRDGTRVRAHLFVLGTCSDLMRSILVDVPPGQEATIILPDIRGELLESMMSFIYMGETSLSSASLSEFLEAINLLGIKSAISFECSPTVSSPSEDPDNKSLAVETAKSITGLHIAQAELLDEEEEGEAERPMVSVPSAVLGEHSRPLEYLNVYDAPKITYSIEHIEGNANSNQFILTDNTGTFTITQSASSLAKIDPPGNAQETAELVDEDAEEDIPDEAEEPDTQIMEEEYTASDPPIELNAAADVDDDDDNLHEDLVDEEEILDIKPRKPGGGVKSRGRRPHNPKTVKRLPARPHRHEPYGSLKREMKDDINDALDLAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRSNRERPSLLEAYERLKTGDSLKNISQDLSIPMSTLHRHKVRLSAQGRLPNFVSSRRRDSTPKDELRDKLAKAVHACLNEGMSQNHAAHLFEIPKSTLWRHLQRRTANEDRKVKKEQQDDYDDDMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00594467;
- 90% Identity
- iTF_00525803;
- 80% Identity
- iTF_00569788;