Dkik011312.1
Basic Information
- Insect
- Drosophila kikkawai
- Gene Symbol
- -
- Assembly
- GCA_018152535.1
- Location
- NW:1851915-1853972[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7e-16 3.5e-13 48.7 0.0 2 45 346 389 345 389 0.95 2 3 0.041 85 2.7 0.0 28 37 419 428 418 433 0.90 3 3 3.4e-20 7.1e-17 60.5 0.0 2 42 455 495 454 497 0.95
Sequence Information
- Coding Sequence
- atgAATCATCTGAAGTGGATGGGCCACTCCACCACGCTCATGGAGATACAGCGTTCGCTGCGCAATGACAATCAGACCTGCGAGGTGGTCCTGGCCTCCAGGGACGGCACCCGGGTACGCGCCCATCTCTTCGTGCTAAGCACCTGCAGCGACCTGATGCGGAACATCCTGGTGGACGTGCCGCCGGGTCAGGAGGCCACCATCATTCTGCCCGACATACGCGGCGAGCTGCTTGAGAGTATGATGTCGTTCATCTACATGGGCGAGACGAGTCTGTCGTCCACCTCCCTGTCCGAGTTCCTCGAGGCCATCAACCTTCTGGGCATTAAGTCTGCCATCAGTTTTGAGTGCAATCCCACCGTGAGTCCGCCCAGTGCTGATGCAGGCAACGGATCGCTGGCCGTGGAGACGGCCAAGTCGATAACTGGCCTGCAGATCGCCCAGGCCGAGCTGCTGGACGAGGGGGAGGAGGAAGAGGGCGAGAACCCGATGGTCACCGTGCCGGGCACAGTTCTGGCCGAGCCCAGTCGCCCGCTGGAGTACCTAGACGTGTATGATGCGCCGAAGATCACTTACTCCATCGAGCACATGGATGGCAACACGAACAGCAGCCAGTTTATACTCACTGAGAACACAGGCACCTTTACCATCACTCAGTCCGCCTCGAGTTTGTCTAAGATAGATACCCAGGGCAATGCGCAGGAGAACGCCGAGCTGGGCGACGAGGATGTGGATGAGGATGCCACCGACGAGCCCGAAGAGCCAGACACACAGATAATGGAGGAGGACTACACTCCAACCGATCCTCTAATTGAGCTAAACGCTGCCGCCGAAATGGACGACGATGACAACATGCACGAGGATTTGGTGGACGAGGAGGACATCCTGGACATTAAGCCACGTAAGCTGGGCGGCGGCGGAAAGTCGCGTGTACGTCGTCCGCACAATACAAGGGCCGCCAAGCGTCAACTGCCCCCTAAGCCCCATCGACAGGAACAGTATGGATCGCTGAAGCGCGAGGTAAAGGATGACATCAACGACGCCTTGGATCTAGCAGCGGATGCTGTTATCCTCGAGGGACTGAGCCTGCAAAAGGCTGCCGACCGCTTTGACATCTCCAAGACGGTCCTGTGGCGTCGCGTGCGCACCAATCCCGCCTATATGCGGAGTAATCGCGAAAGGCCAGCGCTTCTGGAGGCTTACGAGCGTCTGAAGAACGGCGACTCGTTGAAGAACATTAGCCAGGATCTCCGCATACCAATGTCCACTCTGCACCGTCACAAGGTCCGTCTATCGGCCCAGGGCCGCCTGCCAAATTTTGTGGCCTGCCGCCGTCGGGACTCGACACCAAAGGACGAGCTGCGCGACAAGCTAGCCAAGGCGGTCCATGCCTGCATCAACGAGGGCATGTCGCAAAACCACGCAGCCAATTTGTTTGAGATCCCCAAGAGCACGCTCTGGCGACATCTGCAGCGACGGATGTCGAACCAGGATCGGAAGGTGAAGAAGGAACTGCATGACGAGTACGATGACGTGCTAAACTAG
- Protein Sequence
- MNHLKWMGHSTTLMEIQRSLRNDNQTCEVVLASRDGTRVRAHLFVLSTCSDLMRNILVDVPPGQEATIILPDIRGELLESMMSFIYMGETSLSSTSLSEFLEAINLLGIKSAISFECNPTVSPPSADAGNGSLAVETAKSITGLQIAQAELLDEGEEEEGENPMVTVPGTVLAEPSRPLEYLDVYDAPKITYSIEHMDGNTNSSQFILTENTGTFTITQSASSLSKIDTQGNAQENAELGDEDVDEDATDEPEEPDTQIMEEDYTPTDPLIELNAAAEMDDDDNMHEDLVDEEDILDIKPRKLGGGGKSRVRRPHNTRAAKRQLPPKPHRQEQYGSLKREVKDDINDALDLAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRSNRERPALLEAYERLKNGDSLKNISQDLRIPMSTLHRHKVRLSAQGRLPNFVACRRRDSTPKDELRDKLAKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRMSNQDRKVKKELHDEYDDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00594467;
- 90% Identity
- iTF_00488768;
- 80% Identity
- iTF_00527412;