Dboc011075.1
Basic Information
- Insect
- Drosophila bocki
- Gene Symbol
- -
- Assembly
- GCA_008042715.1
- Location
- VNJY01001947.1:60546-62072[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-16 3.8e-13 48.8 0.0 2 45 340 383 339 383 0.95 2 3 0.038 89 2.8 0.0 28 37 413 422 409 427 0.91 3 3 3.8e-20 8.9e-17 60.4 0.0 2 42 449 489 448 491 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCCACCACGCTCATGGAGATACAGCGTTCGCTGCGCAATGACAACCAGACCTGCGAGGTGGTCCTGGCCTCCAGGGACGGCACCCGGGTACGCGCCCATCTCTTCGTGCTAAGCACCTGCAGCGACCTAATGCGGAACATCCTGGTGGATGTGCCGCCGGGCCAGGAGGCCACCATCATTCTGCCCGACATACGCGGCGAGCTGCTTGAGAGTATGATGTCGTTCATTTACATGGGCGAGACGAGTCTGTCGTCCGCCTCCCTGTCCGAGTTCCTCGAGGCCATTAACCTTCTGGGCATTAAGTCGGCCATCAGTTTTGAGTGCAATCCAACCGTGAGTCCGCCCAGTGCTGATGCAGGCAACGGATCGCTGGCCGTGGAGACGGCCAAGTCAATAACTGGCCTGCAGATTGCCCAGGCCGAGCTGCTGGacgagggggaggaggaggagggcgagAACCCGCTGGTCACCGTGCCGGGCACAGTTCTGGCCGAGCCCAATCGCCCGCTGGAGTACCTAGACGTGTATGATGCGCCGAAGATCACTTACTCCATTGAGCACATGGATGGCAACACGAACAGCAGCCAGTTTATACTCACCGAGAACACAGGCACCTTTACCATCACTCAGTCCGCCTCGAGTTTGTCCAAGATAGAAGATACCCAGGGCAATGCGCAGGAGAACGCCGAGCTGGGGGACGAGGATGTGGATGAGGATGCAACCGACGAGCCCGAAGAGCCAGACACACAGATAATGGAGGAGGATTACACTCCAACCGATCCTCTAATTGAGCTAAACGCTGCCGCCGAAATGGACGACGATGACAACTTGCACGAGGATTTGGTGGACGAGGAGGACATCCTGGACATTAAGCCACGCAagctgggcggcggcggaaaGTCGCGTGTGCGTCGTCCGCACAATACAAGGGCCGCCAAGCGACTGCCCCCTAAGCCCCATCGACAGGAACAGTATGGATCGCTGAAGCGCGAGGTGAAGGATGACATCAACGACGCCTTGGATCTTGCAGCGGATGCTGTTATCCTCGAGGGGCTGAGCCTGCAGAAGGCTGCCGACCGCTTTGACATCTCCAAGACGGTCCTGTGGCGTCGCGTGCGCACCAATCCCGCCTATATGCGAAGCAATCGCGAAAGGCCAGCGCTTCTGGAGGCTTACGAGCGTCTAAAAAACGGCGACTCGTTGAAGAACATTAGCCAGGAACTCCGCATACCAATGTCCACTCTGCACCGTCACAAGGTCCGTCTATCGGCCCAGGGTCGCCTGCCAAATTTTGTGGCCTGCCGTCGGCGGGACTCGACACCCAAGGACGAGCTGCGCGACAAGCTAGCCAAGGCGGTCCATGCCTGCATCAACGAGGGCATGTCCCAGAATCACGCAGCCAATTTGTTTGAGATCCCCAAGAGCACGCTCTGGCGGCACCTGCAGCGACGGATGTCGAACGAGGATCGGAAGGTGAAGAAGGAACTGCATGACGAGTACGATGACGTGCTAAACTAG
- Protein Sequence
- MGHSTTLMEIQRSLRNDNQTCEVVLASRDGTRVRAHLFVLSTCSDLMRNILVDVPPGQEATIILPDIRGELLESMMSFIYMGETSLSSASLSEFLEAINLLGIKSAISFECNPTVSPPSADAGNGSLAVETAKSITGLQIAQAELLDEGEEEEGENPLVTVPGTVLAEPNRPLEYLDVYDAPKITYSIEHMDGNTNSSQFILTENTGTFTITQSASSLSKIEDTQGNAQENAELGDEDVDEDATDEPEEPDTQIMEEDYTPTDPLIELNAAAEMDDDDNLHEDLVDEEDILDIKPRKLGGGGKSRVRRPHNTRAAKRLPPKPHRQEQYGSLKREVKDDINDALDLAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRSNRERPALLEAYERLKNGDSLKNISQELRIPMSTLHRHKVRLSAQGRLPNFVACRRRDSTPKDELRDKLAKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRMSNEDRKVKKELHDEYDDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00594467;
- 90% Identity
- iTF_00488768;
- 80% Identity
- iTF_00489480;