Dobs013651.1
Basic Information
- Insect
- Drosophila obscura
- Gene Symbol
- retn
- Assembly
- GCA_018151105.1
- Location
- NW:8952816-8977137[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-26 7.1e-23 80.5 0.0 2 89 326 411 325 411 0.96 2 2 3.3 7.9e+03 -3.0 0.1 19 38 572 596 557 608 0.55
Sequence Information
- Coding Sequence
- ATGCAACTTCGCGTGCACCCTACTATGGACTGTAGCGGCCGTTCAAATAGCAATATTGAACGCGATTCCGATTTGGGAGACGATCTGTCACATGGTGATCGAACGGACGACGAGATGCGCGACTGCGACTCCGTGGATGGAGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCGGCCAGACTCAGTCACACAGCGGCCGGAGGCGGAGGCCACAACTTTGCCAGTCCCGATCAGCAGACAGAACTGTCGCTAAGCCATCATCACCAGCTGCCGCCAAACCATCCGCTGAACGCGCTGGGCAGCTTCATGGGCATCGGGGGACTACACAGCATTCCAAATCTGCAGCACAGCGACGTGCTGGAGAAGCTCAAGATGCAGGTGCGCGACATGAAGGTGGGACTAATGGAACAGGACTATGCGGCCGCTGCACATGCGGCAGCCTTCGGGGCCAACATGCTGCCCACGACGATTAGCTCGGGCTTTACACTGCCCCAcaattcggtggctgcggcagcggcagcagcctccTTTGGCCATGTCGCAACGGCGCCCACCGCCAGCAATGGAGGAAGCTACAATGGGGGTGTCATgctaggaggaggaggagcaggaggcggtggcaccaccaccaccacaccaaGTTCGGGCAGCAATCCAGCCACCAATGGAGGCAGCCACTCCGTttccaacaacagcaacatcagccacaacaacaacaacagtaacagcggaggaggcggaggaggtggaccaggaggaggaggaggaggaggaggacatcCCTTCTCGTTTGCATCGCCCACAGCAGTGGCAGGCGGCGGCAAAGAAGCCCGCCACTTTGCAGCTAATTCCGCATCGAACTCATCGACGTCCAGCGAGGCATCGAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGACGATCCCAAGCGCAAGGAGTTCCTCGATGATTTGTTCTCGTTTATGCAAAAGCGCGGCACGCCCATCAATCGGCTGCCCATTATGGCCAAGTCCGTGCTGGATCTGTACGAGCTGTACAATCTGGTGATTGCGCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCGTCGAGCATCACCAGTGCAGCGTTCACCCTGCGGACACAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAGAAGAACCTGAGCACACCGGCCGAGCTGCAGGCGGCCATCGATGGCAATCGGCGGGAAGGACGCCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAACCAGATGCCCCTGACGCCCATTTCGCGCCCCTCGCTGCCGGGTGGCATGCAGCAGATGTCGCCGCTGGCCCTGGTCACCCATGCGGCGGTGGCCAACAATCAGCAggcccaggcagcagcagccgccgcggCCGCACATCATCGACTGATGGGTGCGCCAGGATTCGGACAGATGCCCAATTTGGTCAAGCAGGAGATCGAGAGCCGCATGATGGAGTATCTGCAGCTGATTCAGGCCAAGAAGGAGCAGGGCATGCCGCCAGTCCTGGGCGCCACACAtccccaccagcagcaccaacacccacaccagcaacagcagccgccgtcacagcagcaacagcatctcctccagcagcagcagcagcagcagcggcagcgatcACAGAGCCCGGACATCAGCAAGCACGATGCGCTCAGCGCTCAGGTGGCACTGTGGCACATgtaccacaacaacaacagtccACCTGGCTCGGCACACACCTCCCCCCAGCAACGCGAAGCCCTGAACCTCTCCGACTCTCCACCAAATCTCACAAACATCAAAAGAGAGCGCGAGCGGGAGCCGACGCCAGAGCCCGTGGAGCAGGACGACGGACCGCACCACCCACCGCCGGCCAAGCGAGGGGGCAGCAGCCTCCTGCCGCCTGGCTTCCCCGCCAATTTCTATCTGAATCCACACAACATGGCCGccgtggcggcggcagcgggcTTCCATCACCAGGCGAACAGCGGCCATggacaccagcaccagcaggatGCCGCCTCCGAGGGAGAGCCCGAGGACGAGTACGGCCATGCTGAGCACAACACCACGGGCAACTCCTCGTCCATGCACGACGACGGCGAGGCCCAACAGATGAACGGacaccaccatcaccatcaccagaGCCATCAGCTGGACAAGTCGGATGACTCGGCCATCGAGAACTCGCCCAGCACATCCACCACCACGGCCTCGGTGGGGCATCGCCACAGTTCGCCGGTGTCCACCAAGAAGAAGAGCGGTGGCAAGGCGGCCCAGGCCAGCGGCAAGGATCAGACCGAGGAGAAGTGTGGCGCTAGCTCCGGCAAAATGAATCCCCTGGATACGCTGAGCCTACTCTCCGGCTTGCAGTTCCAGGTGTCCAGGAATGGAACTGGCGAGAACGGAGAGCAGCAGCTCATTGTCAATCTCGAACTGAATGGCATCAAGTACTCGGGTGTCCTGATGGCGAATGCTCCAATCGGGGACCAGGCGGAGACCAGAACGGGATCGCCATGCCCCGAGCCAGCGGgtgacaacgacgacgacgaggaggaggaggaagaggaggctTCGCATGccgtggaggaggaggctcaACGTTCGCCAGTCAAAGAAGAAGCCAGCGAGGAGACAGACCAGGATATGGACaccagtgctgctgctgccattgtgaatggtggtggggggacTGTGGGAGTGGGTGCTGCCGGTGTGGGTATCTCCCTGCTGAAGGATGCGGTGCTCAGTTCGTAG
- Protein Sequence
- MQLRVHPTMDCSGRSNSNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTAAGGGGHNFASPDQQTELSLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSGFTLPHNSVAAAAAAASFGHVATAPTASNGGSYNGGVMLGGGGAGGGGTTTTTPSSGSNPATNGGSHSVSNNSNISHNNNNSNSGGGGGGGPGGGGGGGGHPFSFASPTAVAGGGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPGFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGATHPHQQHQHPHQQQQPPSQQQQHLLQQQQQQQRQRSQSPDISKHDALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVEQDDGPHHPPPAKRGGSSLLPPGFPANFYLNPHNMAAVAAAAGFHHQANSGHGHQHQQDAASEGEPEDEYGHAEHNTTGNSSSMHDDGEAQQMNGHHHHHHQSHQLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKSGGKAAQASGKDQTEEKCGASSGKMNPLDTLSLLSGLQFQVSRNGTGENGEQQLIVNLELNGIKYSGVLMANAPIGDQAETRTGSPCPEPAGDNDDDEEEEEEEASHAVEEEAQRSPVKEEASEETDQDMDTSAAAAIVNGGGGTVGVGAAGVGISLLKDAVLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603134;
- 90% Identity
- iTF_00471393; iTF_00580483; iTF_00574593; iTF_00580482; iTF_00487091; iTF_00474293; iTF_00517495; iTF_00480664; iTF_00473564; iTF_00603134; iTF_00535839;
- 80% Identity
- -