Dlow009830.1
Basic Information
- Insect
- Drosophila lowei
- Gene Symbol
- retn
- Assembly
- GCA_008121275.1
- Location
- CM017778.1:23998849-24020079[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-26 7.8e-23 80.5 0.0 2 89 313 398 312 398 0.96 2 2 2.7 7.2e+03 -2.7 0.1 14 38 555 584 543 597 0.56
Sequence Information
- Coding Sequence
- ATGCAACTTCGCGTGCACCCTACTATGGACTGTAGCGGCCGTTCAAATAGCAACATTGAACGCGATTCCGATTTGGGAGACGACCTGTCACATGGTGATCGAACGGACGACGAGATGCGCGACTGTGACTCCGTGGATGGGGAGCATCAGCACCATCAGCTGAGCGCCAAGGCGGCGATTGCTGCCAGACTCAGTCACTCAGCGGCCGGCGGAGGCCACAACTTTGCCAGTCCCGATCAGCAGACAGAACTGCCACTAAGCCATCACCATCAGCTGCCGCCAAATCATCCGCTGAATGCGCTGGGCAGCTTCATGGGCATCGGGGGACTACACAGCATTCCAAATCTGCAGCACAGCGACGTCCTGGAGAAGCTTAAGATGCAGGTGCGCGACATGAAGGTGGGACTAATGGAACAGGACTATGCGGCCGCTGCCCATGCGGCGGCCTTCGGGGCCAATATGCTGCCCACGACGATTAGCCCGGGCTTCACCCTGCCCCACAATtcggtggcagcggcagcggcagcagcctcCTTTGGGCATGTGGCCTCGGCGCCCACTGCCAGCAATGGTGGCAGCTACAACGGGGGTGTCATGGGAGgaggcaccaccaccacaccaAGTTCGGGCAGCAATCCAGCCACCAATGGAGGCAGCCACTCCGtttccaacaacaacagtagcagcggaggaggaggtggagcagGACCAGGAGGAGGCGcaggcggaggtggaggacaTCCCTTCTcgtttgcatcgcccacaGCAGTGGCAGGCGGTGGCAGCAAAGAAGCCCGCCACTTTGCAGCTAATTCCGCATCGAACTCATCGACGTCCAGCGAGGCATCGAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGACGATCCCAAGCGCAAGGAGTTCCTCGATGATCTGTTCTCGTTTATGCAAAAGCGCGGCACGCCCATCAATCGGCTGCCCATTATGGCCAAGTCCGTGCTGGATCTCTATGAGCTCTACAATCTGGTGATTGCGCGCGGGGGCCTCGTCGATGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCGTCGAGCATCACCAGTGCAGCGTTCACCCTGCGGACTCAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAGAAGAACCTGAGCACACCGGCCGAGCTGCAGGCGGCCATCGATGGCAATCGGCGGGAAGGACGCCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAACCAGATGCCCCTGACGCCCATTTCGCGCCCCTCTCTGCCGGGTGGCATGCAGCAGATGTCGCCGCTGGCACTGGTCACCCATGCGGCGGTAGCCAACAATCAGCAGGcccaggcagcagccgccgccgcggCCGCACATCATCGACTGATGGGTGCTCCAGGATTCGGCCAAATGCCCAATCTCGTCAAGCAGGAGATCGAGAGCCGCATGATGGAGTATCTGCAGCTGATCCAGGCCAAGAAGGAGCAGGGCATGGCGCCGGTCCTGGGCGCCACACAtccccaccagcagcaccaacaccagcaccagcagcagccgccgccacagcagcagcagcagcatctcctccagcaacaacagcagcagcagcaacgacagcGATCGCAGAGTCCGGACATCAGCAAGCACGATGCGCTTAGCGCACAGGTGGCACTGTGGCACATgtaccacaacaacaacagtccACCGGGATCGGCTCACACCTCCCCGCAGCAACGCGAAGCCCTAAACCTCTCCGACTCTCCACCGAATCTCACGAATATCAAAAGAGAACGCGAACGCGAGCCGACGCCAGAGCCCGTGGAGCAGGACGACGGACCGCACCACCCACCGCCGGCTAAACGGGGAGGCAGCAGCCTCCTGCCGCCCGGTTTCCCCGCCAATTTCTATCTGAATCCACACAACATGGCCGCcgtggcggcggcagcgggCTTCCATCATCAGGCGAACAGCGGCCATGGAGgacaccagcaccagcaggaCGCCGCCTCCGAGGGGGAGCCCGAGGACGAGTACGGCCATGCAGAGCACAACACCACGGGCAACTCCTCGTCCATGCACGACGACGGCGAGGCCCAACAGATGAACGGacaccaccatcaccaccagAGCCACCAGCTGGACAAGTCGGATGACTCGGCCATCGAGAACTCGCCCAGCACATCCACCACCACCGCCTCGGTGGGGCATCGCCACAGTTCGCCGGTGTCCACAAAGAAGAAGAGCGGCAAGGCGGCCCAGGCCAGCGCCAAGGATCTGCCGGAGGAGAAGTGTGGCGGTAGCTCTAAAATGAATCCCCTGGATACGCTGAGCCTACTCTCGGGCATGCAGTTCCAGGTGGCCAGGAATGGAACTGGCGAGAATGGAGAGCAGCAGCTCATTGTCAATCTCGAGCTGAATGGCATCAAGTACTCGGGTGTCCTAGTGGCGAATGCGCCAATAACACAGGCGGCGACCGGGAGAACGGGATCCCCATGCCCCGAGCCAGCGGGTGatgacgaggaggaggaggaagaggaggattCGCAAGCCGTGAACGAGGAGGAGGCTCAACAACGTTCGCCAGTCAAGGAAGAAGCCAACGAGGAGACAGACCAGGATATGGACaccagtgctgctgctgctgccattgtgAATGGTAGCGGGGGGACAGTGGGAGCGGGAGTGGGTGCTGCCGGTGTGGGTATCTCCCTGCTGAAGGATGCGGTGCTCAGTTCGTAG
- Protein Sequence
- MQLRVHPTMDCSGRSNSNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHQHHQLSAKAAIAARLSHSAAGGGHNFASPDQQTELPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISPGFTLPHNSVAAAAAAASFGHVASAPTASNGGSYNGGVMGGGTTTTPSSGSNPATNGGSHSVSNNNSSSGGGGGAGPGGGAGGGGGHPFSFASPTAVAGGGSKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPGFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMAPVLGATHPHQQHQHQHQQQPPPQQQQQHLLQQQQQQQQRQRSQSPDISKHDALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVEQDDGPHHPPPAKRGGSSLLPPGFPANFYLNPHNMAAVAAAAGFHHQANSGHGGHQHQQDAASEGEPEDEYGHAEHNTTGNSSSMHDDGEAQQMNGHHHHHQSHQLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKSGKAAQASAKDLPEEKCGGSSKMNPLDTLSLLSGMQFQVARNGTGENGEQQLIVNLELNGIKYSGVLVANAPITQAATGRTGSPCPEPAGDDEEEEEEEDSQAVNEEEAQQRSPVKEEANEETDQDMDTSAAAAAIVNGSGGTVGAGVGAAGVGISLLKDAVLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603134;
- 90% Identity
- iTF_00563679;
- 80% Identity
- -