Dalg004906.1
Basic Information
- Insect
- Drosophila algonquin
- Gene Symbol
- retn_1
- Assembly
- GCA_035041765.1
- Location
- JAWNKY010000899.1:2324119-2346795[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-26 9.9e-23 80.5 0.0 2 89 322 407 321 407 0.96 2 2 4.5 1.3e+04 -3.2 0.0 14 38 562 591 554 602 0.58
Sequence Information
- Coding Sequence
- ATGCAACTTCGCGTGCACCCTACTATGGACTGTAGCGGCCGTTCTAATAGCAATATTGAACGCGATTCCGATTTGGGAGACGATCTGTCACATGGTGATCGAACGGACGACGAGATGCGCGACTGTGACTCCGTGGATGGAGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCGGCCAGACTCAGTCACACAGCGTCcggtggcggaggcggaggtcACAACTTTGCCAGTCCCGATCAGCAGACAGAACTGCCACTAAGCCATCACCGTCAGCTGCCGCCAAATCATCCGCTTAACGCGCTGGGCAGCTTCATGGGCATCGGGGGACTACACAGCATTCCAAATCTGCAGCACAGCGACGTCCTGGAGAAGCTCAAGATGCAGGTGCGCGACATGAAGGTGGGACTAATGgaACAGGACTATGCGGCCGCTGCCCATGCGGCAGCCTTCGGGGCCAATATGCTGCCCACGACGATTAGCTCGGGCTTTACCCTGCCACACAAttcggtggcagcggcagcggccgcaGCCTCCTTTGGCCATGTGGCCTCGGCGCCCACTGCCAGCAATGGCGGCAGCTACAATGGGGGTGTcatgggaggaggaggaggaggaggcggcaacACCACCACACCAAGTTCGGGCAACAATCCAGCCACCAATGGAGGCAGCCACGCCAACGTttccaacaataacaacaacaacagtagcggcggaggaggcggaggtggagcaggaccaggcggaggcggaggcggaggacaTCCCTTCTCGTTTGCATCGCccacagcagtggcaggcggTGGCGGCAAAGAAGCCCGCCACTTTGCAGCTAATTCAGCATCGAACTCATCGACGTCCAGCGAGGCATCGAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGACGATCCCAAGCGCAAGGAGTTCCTCGATGATCTGTTCTCGTTTATGCAAAAGCGCGGCACGCCCATCAATCGGCTGCCCATTATGGCCAAGTCCGTGCTGGATCTCTACGAGCTGTACAATCTGGTGATTGCGCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCGTCGAGCATCACCAGTGCAGCGTTCACCCTGCGGACCCAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAGAAGAACCTGAGCACACCGGCCGAGCTGCAGGCGGCCATCGATGGCAATCGGCGGGAAGGACGCCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAACCAGATGCCCCTGACGCCCATTTCGCGTCCCTCCCTCCCGGGTGGCATGCAGCAGATGTCGCCGCTGGCATTGGTCACCCATGCGGCGGTAGCCAACAATCAGCAGGCccaggcagcagccgccgccgcggcCGCACATCATCGACTGATGGGTGCTCCAGGATTCGGCCAGATGCCCAATCTCGTCAAGCAGGAGATCGAGAGTCGCATGATGGAGTATCTGCAGCTTATTCAGGCCAAGAAGGAGCAGGGCATGGCTCCAGTCCTGGGCGCCACACatccccaccagcagcaccaacaccaacaccagcagcagcagccgccgccacagcaacagcagcagcaacatctcctccagcagcagcagcggcagcgatcACAGAGTCCGGACATCAGCAAGCACGATGCGCTCAGCGCACaggtggcactgtggcacatgtaccacaacaacaacagtccaCCGGGATCGGCACACACCTCCCCCCAGCAACGCGAAGCCCTGAACCTCTCCGACTCTCCACCGAATCTCACGAACATCAAAAGAGAACGCGAACGGGAGCCCACTCCAGAGCCCGTGGAGCAGGACGACGGACCGCTCCACCCACCGCCGGCCAAACGAGGGGGCAGTAGCCTCCTGCCACCCGGTTTCCCCGCCAATTTCTATCTGAATCCACACAACATGGCTGccgtggcagcggcagcgggctTCCACCACCAGGCGAACAGCGGCCACGGGggacaccagcaccagcaggacGCTGCCTCCGAGGGGGAGCCCGAGGACGAGTACGGTCATGCAGAGCACAACACCACGGGCAACTCTTCGTCCATGCACGACGACGGCGAGGCCCAGCAGATGAACGgacaccaccatcaccaccaccagagCCATCAGCTGGACAAGTCGGATGACTCGGCCATCGAGAACTCGCCCAGCAcatccaccaccaccgcctcgGTAGGGCATCGCCACAGTTCGCCGGTGTCCACCAAGAAGAAGAGCGGAAAGGCCGCTCAAGCCAGTGCCAAGGATCTGCCGGAGGAGAAGTCTGGCGGTAGCTCTAAAATGAATCCCCTAGACACGCTGAGTCTACTCTCCGGCATGCAGTTCCAGGTGGCCAGAAATGGAACTGGCGAGAACGGAGAGCAGCAGCTCATTGTCAATCTCGAGCTGAATGGCATCAAGTACTCGGGTGTCCTGGTGGCGAATGCCCCAACTACACTGACAGAGGCCAGAAGAACGGGATCGCCATGCCCCGAGCCAGCGGGTGATgacgaggaggacgacgaagaggaggaggcttCGCATGCCGTGGACGAGGAggctcaacaacaacaacaacgttcGCCAATAAAAGAAGAAGCCAACGAGGAGACAGACCAGGACATGGAcaccagtgctgctgctgccattgtgAATGGTGGCGGGGGGACAGTGGGAGCGGGAGTGGGTGCTGCCGGTGTGGGTATCCCCCTGCTGAAGGATGCGGTGCTCAGTTCGTAG
- Protein Sequence
- MQLRVHPTMDCSGRSNSNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTASGGGGGGHNFASPDQQTELPLSHHRQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSGFTLPHNSVAAAAAAASFGHVASAPTASNGGSYNGGVMGGGGGGGGNTTTPSSGNNPATNGGSHANVSNNNNNNSSGGGGGGGAGPGGGGGGGHPFSFASPTAVAGGGGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPGFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMAPVLGATHPHQQHQHQHQQQQPPPQQQQQQHLLQQQQRQRSQSPDISKHDALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVEQDDGPLHPPPAKRGGSSLLPPGFPANFYLNPHNMAAVAAAAGFHHQANSGHGGHQHQQDAASEGEPEDEYGHAEHNTTGNSSSMHDDGEAQQMNGHHHHHHQSHQLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKSGKAAQASAKDLPEEKSGGSSKMNPLDTLSLLSGMQFQVARNGTGENGEQQLIVNLELNGIKYSGVLVANAPTTLTEARRTGSPCPEPAGDDEEDDEEEEASHAVDEEAQQQQQRSPIKEEANEETDQDMDTSAAAAIVNGGGGTVGAGVGAAGVGIPLLKDAVLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603134;
- 90% Identity
- iTF_00563679;
- 80% Identity
- -