Daff001199.1
Basic Information
- Insect
- Drosophila affinis
- Gene Symbol
- retn_1
- Assembly
- GCA_037356375.1
- Location
- CM074799.1:9126090-9148252[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-26 1.1e-22 80.5 0.0 2 89 316 401 315 401 0.96 2 2 3.6 1e+04 -2.7 0.1 12 38 556 587 539 599 0.61
Sequence Information
- Coding Sequence
- ATGCAACTTCGCGTGCACCCTACTATGGACTGTAGCGGCCGTTCTAATAGCAATATTGAACGCGATTCCGATTTGGGAGACGATCTGTCACATGGTGATCGAACGGACGACGAGATGCGCGACTGTGACTCCGTGGATGGAGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCGGCCAGACTCAGTCACACAGCGTCcggtggcggaggcggaggtcACAACTTTGCCAGTCCCGATCAGCAGACAGAACTGCCACTAAGCCATCACCATCAGCTGCCGCCAAATCATCCGCTTAACGCGCTGGGCAGCTTCATGGGCATCGGGGGACTACACAGCATTCCAAATCTGCAGCACAGCGACGTCCTGGAGAAGCTCAAGATGCAGGTGCGCGACATGAAGGTGGGACTAATGGAACAGGACTATGCGGCCGCCGCCCATGCGGCAGCCTTCGGGGCCAATATGCTGCCCACGACGATTAGCTCGGGCTTTACCCTGCCACACAATtcggtggcagcggcagcggccgcAGCCTCCTTTGGCCATGTGGCCTCGGCGCCCACTGCCAGCAATGGTGGCAGCTACAATGGGGGTGTCatcggaggaggaggcagcaacAATACACCAAGTTCGGGCAACAATCCAGCCACCAATGGAGGCAGCCACGCCAACGTTTccagcaataacaacaacaacagtagcggcggaggaggcggaggtggagcaggaccaggcggaggcggaggacaTCCCTTCTCGTTTGCATCGCCCACAGCAGTGGCAGGCGGTGGCGGCAAAGAAGCCCGCCACTTTGCAGCTAATTCAGCATCGAACTCATCGACGTCCAGCGAGGCATCGAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGACGATCCCAAGCGCAAGGAGTTCCTCGATGATCTGTTCTCGTTTATGCAAAAGCGCGGCACGCCCATCAATCGGCTGCCCATTATGGCCAAGTCCGTGCTGGATCTCTACGAGCTGTACAATCTGGTGATTGCGCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCGTCGAGCATCACCAGTGCAGCGTTCACCCTGCGGACCCAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAGAAGAACCTGAGCACACCGGCCGAGCTGCAGGCGGCCATCGATGGCAATCGGCGGGAAGGACGCCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAACCAGATGCCCCTGACGCCCATTTCGCGTCCCTCCCTCCCGGGCGGCATGCAGCAGATGTCGCCGCTGGCATTGGTCACCCATGCGGCGGTGGCCAACAATCAGCAGGCccaggcagcagccgccgccgcggCCGCACATCATCGACTGATGGGTGCTCCAGGATTCGGCCAGATGCCCAATCTCGTCAAGCAGGAGATCGAGAGTCGCATGATGGAGTATCTGCAGCTAATTCAGGCCAAGAAGGAGCAGGGCATGGCTCCAGTCCTGGGCGCCACACAtccccaccagcagcaccaacaccaacaccagcagcagcagcatcagccgccgcaacagcaacagcagcagcaacatctcctccagcagcagcagcggcagcgatcACAGAGTCCGGACATCAGCAAGCACGATGCGCTCAGCGCACAGGTGGCACTGTGGCACATgtaccacaacaacaacagtccaCCGGGATCGGCACACACCTCCCCCCAGCAACGCGAAGCCCTGAACCTCTCCGACTCTCCACCGAATCTCACGAACATCAAAAGAGAACGCGAACGGGAGCCCACTCCAGAGCCCGTGGAGCCGGACGACGGACCGCTCCACCCACCGCCGGCCAAACGAGGGGGCAGTAGCCTCCTGCCACCCGGTTTCCCCGCCAATTTCTATCTGAATCCACACAACATGGCTGccgtggcagcggcagccggcTTCCATCACCAGGCGAACAGCGGCCATGGGGgacaccagcaccagcaggacGCCGTCTCCGAGGGGGAGCCCGAGGACGAGTACGGTCATGCAGAGCACAACACCACGGGCAACTCCTCGTCCATGCACGACGACGGCGAGGCCCAGCAGATGAACGgacaccaccatcaccaccaccagagCCATCAGCTGGACAAGTCGGATGACTCGGCCATCGAGAACTCGCCCAGCACAtccaccaccaccgcctcGGTAGGGCATCGCCACAGTTCGCCGGTGTCCACCAAGAAGAAGAGCGGCAAGGCCGCTCAGGCCAGTGTCAAGGATCTGCCGGAGGAGAAATCTGGCGCTAGCTCTAAAATGAGTCCCCTAGACACGCTGAGCCTTCTCTCCGGCATGCAGTTCCAGGTGGCCAGGAATGGAACTGGCGAGAACGGAGAGCAACAGCTCATTGTCAATCTCGAGCTGAATGGCATCAAGTACTCGGGTGTCCTGGTGGCGAATGCCCCAATTACACAGACAGAGGCTGGACGAACGGGATCGCCATGCCCCGAGACAGCTGGTGATGACGAGGAGGAcgacgaagaggaggaggcTTCGCATGCCGTGGACGAGGAggctcaacaacaacaacaacgttCGCCAATAAAAGAAGAAGCCAACGAGGAGACAGACCAGGACATGGAAaccagtgctgctgctgccattgtgAATGGTGGCGGGGGgacagtggcagcggcagcgggagTGGGTGCTGCCGGTGTGGGTATCCCCCTGCTGAAGGATGCGGTGCTCAGTTCGTAG
- Protein Sequence
- MQLRVHPTMDCSGRSNSNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTASGGGGGGHNFASPDQQTELPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSGFTLPHNSVAAAAAAASFGHVASAPTASNGGSYNGGVIGGGGSNNTPSSGNNPATNGGSHANVSSNNNNNSSGGGGGGGAGPGGGGGHPFSFASPTAVAGGGGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPGFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMAPVLGATHPHQQHQHQHQQQQHQPPQQQQQQQHLLQQQQRQRSQSPDISKHDALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVEPDDGPLHPPPAKRGGSSLLPPGFPANFYLNPHNMAAVAAAAGFHHQANSGHGGHQHQQDAVSEGEPEDEYGHAEHNTTGNSSSMHDDGEAQQMNGHHHHHHQSHQLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKSGKAAQASVKDLPEEKSGASSKMSPLDTLSLLSGMQFQVARNGTGENGEQQLIVNLELNGIKYSGVLVANAPITQTEAGRTGSPCPETAGDDEEDDEEEEASHAVDEEAQQQQQRSPIKEEANEETDQDMETSAAAAIVNGGGGTVAAAAGVGAAGVGIPLLKDAVLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603134;
- 90% Identity
- iTF_00563679;
- 80% Identity
- -