g5563.t2
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- retn
- Assembly
- GCA_009870125.2
- Location
- CM020869.1:13194986-13207397[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-26 9.2e-23 80.6 0.0 2 89 277 362 276 362 0.96 2 2 4.1 9.1e+03 -2.7 0.1 15 38 520 548 508 561 0.56
Sequence Information
- Coding Sequence
- ATGCGCGACTGTGACTCCGTGGAGGGAGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCTGCCAGACTCAGTCACACAGCGGccggcggaggcggaggccacAACTTTGCCAGTCCCGATCAGCAGACAGAACTGCCACTAAGCCATCACCATCAGCTGCCGCCTAATCATCCGCTCAATGCGCTGGGCAGCTTCATGGGCATCGGGGGACTACATAGCATTCCAAATCTGCAGCACAGCGACGTCCTGGAGAAGCTCAAGATGCAGGTGCGCGACATGAAGGTGGGACTAATGGAACAGGACTATGCGGCCGCCGCCCATGCGGCAGCCTTCGGGGCCAATATGCTGCCCACGACGATTAGCCCGGGCTTCACCCTGCCCCACAAttcggtggcagcggcagcggcggcagcctcCTTTGGGCATGTGGCCTCGGCGCCCACCGCCAGCAATGGCGGCAGCTACAACGGGGGTGTCATGGGAGgaggcaccaccaccacaccaaGTTCGGGCAACAATCCAGCCACCAATGGAGGCAGCCACTCCgtttccaacaacaacaacaacagtagcagcggaggaggaggaggtggaggagctgGACCAGGAGGAGGCACAGGCGGAGGACATCCCTTCtcgtttgcatcgcccacagCGGTggcaggcggtggcggcaaaGAAGCCCGCCACTTTGCAGCTAATTCCGCATCGAACTCATCGACGTCCAGCGAGGCATCGAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGACGATCCCAAGCGCAAGGAGTTCCTCGATGATCTGTTCTCGTTTATGCAAAAGCGCGGCACGCCCATCAATCGGCTGCCCATTATGGCCAAGTCCGTGCTGGATCTCTACGAGCTGTACAATCTGGTGATTGCGCGCGGCGGCCTCGTCGATGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCGTCGAGCATCACCAGTGCAGCGTTCACCCTGCGGACCCAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAGAAGAACCTAAGCACACCGGCCGAGCTGCAGGCGGCCATCGATGGCAATCGTCGGGAAGGACGCCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAACCAGATGCCCCTGACGCCCATTTCGCGCCCCTCTCTGCCGGGTGGCATGCAGCAGATGTCGCCGCTGGCTTTGGTCACCCATGCAGCAGTGGCTAACAATCAGCAGGcccaggcagcagccgccgccgcggcCGCACATCATCGACTGATGGGTGCCCCGGGATTCGGCCAGATGCCCAATCTCGTCAAGCAGGAGATCGAGAGCCGCATGATGGAGTATCTGCAGCTCATCCAGGCCAAGAAGGATCAGGGAATGGCGCCAGTCCTGGGCGCCACACatccccaccagcagcaccaacaccaacaccagcaacagcagccaccgccacagcagcagcagcatctcctccagcaacaacagcagcagcagcagcggcagcgatcACAGAGTCCGGACATCAGCAAGCACGATGCGCTCAGCGCACAGGTGGCACTCTGGCACATgtaccacaacaacaacagtccACCGGGATCGGCACACACCTCCCCGCAGCAACGCGAAGCCCTAAACCTCTCAGACTCTCCACCGAATCTCACAAATATCAAAAGAGAACGCGAACGAGAGCCTACGCCAGAGCCCGTGGAGCAGGACGACGGACCGCACCACCCACCGCCTGCTAAACGAGGAGGCAGCAGCCTCCTGCCGCCCGGTTTCCCCGCCAATTTCTATCTGAATCCACACAACATGGCCGccgtggcggcggcagcgggcTTCCATCATCAGGCGAACAGCGGCCATGGAGgacaccagcaccagcaggacGCCGCCTCCGAGGGGGAGCCCGAGGACGAGTACGGCCATGCAGAGCACAACACCACGGGCAACTCCTCGTCCATGCACGACGACGGCGAGGCCCAACAGATGAACGgacaccaccatcaccaccaccagagCCATCAGCTGGACAAGTCGGATGACTCGGCCATCGAAAACTCGCCCAGCAcatccaccaccaccgcctcGGTGGGGCATCGCCACAGTTCGCCGGTGTCCACCAAGAAGAAGAGCGGCAAGGCGGCCCAGGCCAGTGCCAAGGATCAGCCGGAGGAGAAGTGTGGCGGTAGCTCTAAAATGAATCCACTGGATACGCTGAGCCTACTCTCGGGCATGCAGTTCCAGGTGGCCAGGAATGGAACTGGCGAAAATGGAGAGCAGCAGCTTATTGTCAATCTCGAGCTGAATGGCATCAAGTACTCGGGTGTCCTGGTGGCGAATGCACCAATAACACAGGCATCGACCGGGAGAACGGGATCGCCATGCCCCGAGCCAGCGGGCGAtgacgaggaggatgaggaagaggaggatTCGCATGCcgtggacgaggaggaggctcAACAACGTTCGCCAGTCAAGGAAGAGGCCAACGAGGAGACAGACCAGGATATGGACACcagttctgctgctgctgccattgtgAATGGTAGCGGGGGGACAGTGGGGCAGGGAGTGGGTGCTGCCGGTGTGGGTATCTCCCTGCTGAAAGATGCGGTGCTCAGTTCGTAG
- Protein Sequence
- MRDCDSVEGEHHQLSAKAAIAARLSHTAAGGGGGHNFASPDQQTELPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISPGFTLPHNSVAAAAAAASFGHVASAPTASNGGSYNGGVMGGGTTTTPSSGNNPATNGGSHSVSNNNNNSSSGGGGGGGAGPGGGTGGGHPFSFASPTAVAGGGGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPGFGQMPNLVKQEIESRMMEYLQLIQAKKDQGMAPVLGATHPHQQHQHQHQQQQPPPQQQQHLLQQQQQQQQRQRSQSPDISKHDALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVEQDDGPHHPPPAKRGGSSLLPPGFPANFYLNPHNMAAVAAAAGFHHQANSGHGGHQHQQDAASEGEPEDEYGHAEHNTTGNSSSMHDDGEAQQMNGHHHHHHQSHQLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKSGKAAQASAKDQPEEKCGGSSKMNPLDTLSLLSGMQFQVARNGTGENGEQQLIVNLELNGIKYSGVLVANAPITQASTGRTGSPCPEPAGDDEEDEEEEDSHAVDEEEAQQRSPVKEEANEETDQDMDTSSAAAAIVNGSGGTVGQGVGAAGVGISLLKDAVLSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603134;
- 90% Identity
- iTF_00563679;
- 80% Identity
- iTF_00580483;